• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

模拟线性和非线性光学光谱时的显式环境和振子相互作用效应。

Explicit environmental and vibronic effects in simulations of linear and nonlinear optical spectroscopy.

机构信息

Chemistry and Chemical Biology, University of California Merced, Merced, California 95343, USA.

Department of Chemistry, Oregon State University, Corvallis, Oregon 97331, USA.

出版信息

J Chem Phys. 2021 Feb 28;154(8):084116. doi: 10.1063/5.0038196.

DOI:10.1063/5.0038196
PMID:33639769
Abstract

Accurately simulating the linear and nonlinear electronic spectra of condensed phase systems and accounting for all physical phenomena contributing to spectral line shapes presents a significant challenge. Vibronic transitions can be captured through a harmonic model generated from the normal modes of a chromophore, but it is challenging to also include the effects of specific chromophore-environment interactions within such a model. We work to overcome this limitation by combining approaches to account for both explicit environment interactions and vibronic couplings for simulating both linear and nonlinear optical spectra. We present and show results for three approaches of varying computational cost for combining ensemble sampling of chromophore-environment configurations with Franck-Condon line shapes for simulating linear spectra. We present two analogous approaches for nonlinear spectra. Simulated absorption spectra and two-dimensional electronic spectra (2DES) are presented for the Nile red chromophore in different solvent environments. Employing an average Franck-Condon or 2DES line shape appears to be a promising method for simulating linear and nonlinear spectroscopy for a chromophore in the condensed phase.

摘要

准确模拟凝聚相系统的线性和非线性电子光谱,并考虑对光谱线形状有贡献的所有物理现象,这是一个巨大的挑战。通过从发色团的正则模态生成的谐波模型可以捕获振子跃迁,但在这种模型中也包括特定发色团-环境相互作用的影响是具有挑战性的。我们通过结合方法来克服这一限制,这些方法可以同时考虑明确的环境相互作用和振子耦合,以模拟线性和非线性光学光谱。我们提出并展示了三种不同计算成本的方法,用于结合发色团-环境构型的集合采样与模拟线性光谱的 Franck-Condon 线形状。我们提出了两种类似的非线性光谱方法。在不同的溶剂环境中,展示了尼罗红发色团的吸收光谱和二维电子光谱(2DES)。对于凝聚相中的发色团,采用平均 Franck-Condon 或 2DES 线形状似乎是模拟线性和非线性光谱的一种很有前途的方法。

相似文献

1
Explicit environmental and vibronic effects in simulations of linear and nonlinear optical spectroscopy.模拟线性和非线性光学光谱时的显式环境和振子相互作用效应。
J Chem Phys. 2021 Feb 28;154(8):084116. doi: 10.1063/5.0038196.
2
Vibronic and Environmental Effects in Simulations of Optical Spectroscopy.振动与环境效应对光学光谱模拟的影响。
Annu Rev Phys Chem. 2021 Apr 20;72:165-188. doi: 10.1146/annurev-physchem-090419-051350. Epub 2021 Jan 4.
3
Calculating absorption and fluorescence spectra for chromophores in solution with ensemble Franck-Condon methods.用系综弗兰克-康登方法计算溶液中发色团的吸收光谱和荧光光谱。
J Chem Phys. 2024 Jul 28;161(4). doi: 10.1063/5.0217080.
4
Unraveling electronic absorption spectra using nuclear quantum effects: Photoactive yellow protein and green fluorescent protein chromophores in water.利用核量子效应解开电子吸收光谱:水中的光活性黄色蛋白和绿色荧光蛋白发色团。
J Chem Phys. 2018 Jul 14;149(2):024107. doi: 10.1063/1.5025517.
5
Combining the ensemble and Franck-Condon approaches for calculating spectral shapes of molecules in solution.结合集合和 Franck-Condon 方法计算溶液中分子的光谱形状。
J Chem Phys. 2018 Jan 14;148(2):024110. doi: 10.1063/1.5006043.
6
Coherence Spectroscopy in the Condensed Phase: Insights into Molecular Structure, Environment, and Interactions.凝聚相中的相干光谱学:分子结构、环境和相互作用的深入了解。
Acc Chem Res. 2017 Nov 21;50(11):2746-2755. doi: 10.1021/acs.accounts.7b00369. Epub 2017 Oct 18.
7
Modeling the Electronic Absorption Spectra of the Indocarbocyanine Cy3.建模吲哚菁绿染料 Cy3 的电子吸收光谱。
Molecules. 2022 Jun 24;27(13):4062. doi: 10.3390/molecules27134062.
8
Nonlinear spectroscopy in the condensed phase: The role of Duschinsky rotations and third order cumulant contributions.凝聚相中的非线性光谱:杜施insky旋转和三阶累积量贡献的作用。
J Chem Phys. 2020 Jul 28;153(4):044127. doi: 10.1063/5.0013739.
9
Franck-Condon Models for Simulating the Band Shape of Electronic Absorption Spectra.Franck-Condon 模型在模拟电子吸收光谱带型中的应用。
J Chem Theory Comput. 2017 Jun 13;13(6):2823-2830. doi: 10.1021/acs.jctc.7b00325. Epub 2017 May 24.
10
Simulating Vibronic Spectra without Born-Oppenheimer Surfaces.无需玻恩-奥本海默表面模拟电子振动光谱。
J Phys Chem Lett. 2021 Apr 1;12(12):3074-3081. doi: 10.1021/acs.jpclett.1c00073. Epub 2021 Mar 22.

引用本文的文献

1
Cost-Effective Simulations of Vibrationally-Resolved Absorption Spectra of Fluorophores with Machine-Learning-Based Inhomogeneous Broadening.基于机器学习的非均匀展宽的荧光分子振动分辨吸收光谱的经济有效的模拟。
J Chem Theory Comput. 2023 Apr 25;19(8):2304-2315. doi: 10.1021/acs.jctc.2c01285. Epub 2023 Apr 5.
2
Finite-Temperature, Anharmonicity, and Duschinsky Effects on the Two-Dimensional Electronic Spectra from Ab Initio Thermo-Field Gaussian Wavepacket Dynamics.基于从头算热场高斯波包动力学研究有限温度、非简谐性及杜施金斯基效应在二维电子光谱中的作用
J Phys Chem Lett. 2021 Mar 25;12(11):2997-3005. doi: 10.1021/acs.jpclett.1c00123. Epub 2021 Mar 18.