Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisboa, Portugal.
Proteomics and Protein Chemistry Unit, Department of Experimental and Health Sciences, Pompeu Fabra University, Barcelona, Spain.
Clin Transl Sci. 2021 Jul;14(4):1349-1358. doi: 10.1111/cts.12985. Epub 2021 Feb 28.
Proteolytic instability is a critical limitation for peptide-based products. Although significant efforts are devoted to stabilize sequences against proteases/peptidases in plasma/serum, such approaches tend to be rather empirical, unspecific, time-consuming, and frequently not cost-effective. A more rational and potentially rewarding alternative is to identify the chemical grounds of susceptibility to enzymatic degradation of peptides so that proteolytic resistance can be tuned by manipulation of key chemical properties. In this regard, we conducted a meta-analysis of literature published over the last decade reporting experimental data on the lifetimes of peptides exposed to proteolytic conditions. Our initial database contained 579 entries and was curated with regard to amino acid sequence, chemical modification, terminal half-life (t ) or other stability readouts, type of stability assay, and biological application of the study. Although the majority of entries in the database corresponded to (slightly or substantially) modified peptides, we chose to focus on unmodified ones, as we aimed to decipher intrinsic characteristics of peptide proteolytic susceptibility. Specifically, we developed a multivariable regression model to unravel those peptide properties with most impact on proteolytic stability and thus potential t predicting ability. Model validation was done by two different approaches. First, a library of peptides spanning a large interval of properties that modulate stability was synthesized and their t in human serum were experimentally determined. Second, the t of 21 selected peptides approved for clinical use or in clinical trials were recorded and matched with the model-estimated values. With both approaches, good correlation between experimental and predicted t data was observed.
蛋白水解不稳定性是基于肽的产品的一个关键限制。虽然人们投入了大量精力来稳定肽序列以抵抗血浆/血清中的蛋白酶/肽酶,但这些方法往往是经验性的、非特异性的、耗时的,并且常常不具有成本效益。一种更合理且有潜力的替代方法是确定肽易被酶降解的化学基础,以便通过操纵关键化学性质来调整其抗蛋白水解性。在这方面,我们对过去十年发表的报告肽在暴露于蛋白水解条件下的寿命的实验数据的文献进行了荟萃分析。我们的初始数据库包含 579 条条目,并针对氨基酸序列、化学修饰、末端半衰期(t)或其他稳定性读数、稳定性测定类型以及研究的生物学应用进行了编辑。尽管数据库中的大多数条目对应于(略有或大幅)修饰的肽,但我们选择专注于未修饰的肽,因为我们旨在揭示肽蛋白水解易感性的内在特征。具体来说,我们开发了一个多变量回归模型,以揭示对蛋白水解稳定性影响最大的那些肽性质,从而具有潜在的 t 预测能力。通过两种不同的方法进行了模型验证。首先,合成了一个跨越性质的较大区间的肽文库,这些性质可以调节稳定性,并通过实验测定了它们在人血清中的 t。其次,记录了 21 种经临床批准或在临床试验中使用的选定肽的 t,并将其与模型估计值相匹配。在这两种方法中,都观察到实验和预测的 t 数据之间的良好相关性。