Wu Dan, Zhu Guanyu, Zhang Yufei, Wu Yan, Zhang Chunlei, Shi Jiayi, Zhu Xiaofeng, Yuan Xiaohuan
Heilongjiang Key Laboratory of Anti-fibrosis Biotherapy, Mudanjiang Medical University, Mudanjiang, China.
Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China.
PeerJ. 2021 Feb 17;9:e10901. doi: 10.7717/peerj.10901. eCollection 2021.
Mitochondria are unique organelles that are found in most eukaryotic cells. The main role of the mitochondria is to produce ATP. The nuclear genome encoded proteins Cbs1 and Cbs2 are located at the mitochondrial inner membrane and are reported to be essential for the translation of mitochondrial cytochrome b mRNA. Genetic studies show that Cbs2 protein recognizes the 5' untranslated leader sequence of mitochondrial cytochrome b mRNA. However, due to a lack of biochemical and structural information, this biological process remains unclear. To investigate the structural characteristics of how () Cbs2 tethers cytochrome b mRNA to the mitochondrial inner membrane, a preliminary X-ray crystallographic study was carried out and is reported here.
The target gene from was amplified by polymerase chain reaction. The PCR fragment was digested by the NdeI and XhoI restriction endonucleases and then inserted into expression vector p28. After sequencing, the plasmid was transformed into C43 competent cells. The selenomethionine derivative Cbs2 protein was overexpressed using M9 medium based on a methionine-biosynthesis inhibition method. The protein was first purified to Ni-nitrilotriacetate affinity chromatography and then further purified by Ion exchange chromatography and Gel-filtration chromatography. The purified Se-Cbs2 protein was concentrated to 10 mg/mL. The crystallization trials were performed using the sitting-drop vapor diffusion method at 16 °C. The complete diffraction data was processed and scaled with the HKL2000 package and programs in the CCP4 package, respectively.
Cbs2 from was cloned, prokaryotic expressed and purified. The analysis of the size exclusion chromatography showed that the Cbs2 protein peaked at a molecular weight of approximately 90 KDa. The crystal belonged to the space group C2, with unit-cell parameters of = 255.11, = 58.10, = 76.37, and = 95.35°. X-ray diffraction data was collected at a resolution of 2.7 Å. The Matthews coefficient and the solvent content were estimated to be 3.22 Å 3 Da-1 and 61.82%, respectively.
In the present study Cbs2 from was cloned, expressed, purified, and crystallized for structural studies. The molecular weight determination results indicated that the biological assembly of Cbs2 may be a dimer.The preliminary X-ray crystallographic studies indicated the presence of two Cbs2 molecules in the asymmetric unit. This study will provide an experimental basis for exploring how Cbs2 protein mediates cytochrome b synthesis.
线粒体是存在于大多数真核细胞中的独特细胞器。线粒体的主要作用是产生三磷酸腺苷(ATP)。核基因组编码的蛋白质Cbs1和Cbs2位于线粒体内膜,据报道它们对于线粒体细胞色素b mRNA的翻译至关重要。遗传学研究表明,Cbs2蛋白识别线粒体细胞色素b mRNA的5'非翻译前导序列。然而,由于缺乏生化和结构信息,这一生物学过程仍不清楚。为了研究Cbs2如何将细胞色素b mRNA连接到线粒体内膜的结构特征,我们进行了初步的X射线晶体学研究并在此报告。
通过聚合酶链反应扩增来自的目标基因。将PCR片段用NdeI和XhoI限制性内切酶消化,然后插入表达载体p28。测序后,将质粒转化到C43感受态细胞中。基于甲硫氨酸生物合成抑制方法,使用M9培养基过表达硒代甲硫氨酸衍生物Cbs2蛋白。该蛋白首先通过镍 - 次氮基三乙酸亲和色谱纯化,然后通过离子交换色谱和凝胶过滤色谱进一步纯化。将纯化的Se - Cbs2蛋白浓缩至10 mg/mL。在16°C下使用坐滴气相扩散法进行结晶试验。完整的衍射数据分别使用HKL2000软件包和CCP4软件包中的程序进行处理和缩放。
克隆、原核表达并纯化了来自的Cbs2。尺寸排阻色谱分析表明,Cbs2蛋白在分子量约为90 kDa处达到峰值。晶体属于空间群C2,晶胞参数为 = 255.11, = 58.10, = 76.37, = 95.35°。在2.7 Å的分辨率下收集X射线衍射数据。马修斯系数和溶剂含量估计分别为3.22 ų Da⁻¹和61.82%。
在本研究中,克隆、表达、纯化并结晶了来自的Cbs2用于结构研究。分子量测定结果表明,Cbs2的生物组装可能是二聚体。初步的X射线晶体学研究表明,不对称单元中存在两个Cbs2分子。本研究将为探索Cbs2蛋白如何介导细胞色素b合成提供实验依据。