Department of Chemistry, Rikkyo University, Nishi-Ikebukuro, Toshima, Tokyo 171-8501, Japan.
Graduate School of Integrated Pharmaceutical and Nutritional Sciences, University of Shizuoka, 52-1 Yada, Suruga, Shizuoka 422-8526, Japan.
Molecules. 2021 Feb 26;26(5):1262. doi: 10.3390/molecules26051262.
Infection of hosts by morbilliviruses is facilitated by the interaction between viral hemagglutinin (H-protein) and the signaling lymphocytic activation molecule (SLAM). Recently, the functional importance of the -terminal region of human SLAM as a measles virus receptor was demonstrated. However, the functional roles of this region in the infection process by other morbilliviruses and host range determination remain unknown, partly because this region is highly flexible, which has hampered accurate structure determination of this region by X-ray crystallography. In this study, we analyzed the interaction between the H-protein from canine distemper virus (CDV-H) and SLAMs by a computational chemistry approach. Molecular dynamics simulations and fragment molecular orbital analysis demonstrated that the unique His28 in the -terminal region of SLAM from Macaca is a key determinant that enables the formation of a stable interaction with CDV-H, providing a basis for CDV infection in Macaca. The computational chemistry approach presented should enable the determination of molecular interactions involving regions of proteins that are difficult to predict from crystal structures because of their high flexibility.
麻疹病毒通过病毒血凝素(H 蛋白)与信号淋巴细胞激活分子(SLAM)之间的相互作用感染宿主。最近,证明了人类 SLAM 的 N 端区域作为麻疹病毒受体的功能重要性。然而,该区域在其他麻疹病毒感染过程中的功能作用和宿主范围的确定仍不清楚,部分原因是该区域高度灵活,这阻碍了 X 射线晶体学对该区域的准确结构测定。在这项研究中,我们通过计算化学方法分析了犬瘟热病毒(CDV-H)和 SLAMs 之间的相互作用。分子动力学模拟和片段分子轨道分析表明,SLAM 中独特的 N 端 His28 是一个关键决定因素,使 SLAM 能够与 CDV-H 形成稳定的相互作用,为 CDV 在猕猴中的感染提供了基础。所提出的计算化学方法应该能够确定涉及蛋白质区域的分子相互作用,这些区域由于其高度灵活性而难以从晶体结构中预测。