Department of Chemistry and Chemical Biology, Northeastern University, Boston, MA 02115.
Department of Chemistry, University of California, Berkeley, CA 94720.
Proc Natl Acad Sci U S A. 2021 Mar 9;118(10). doi: 10.1073/pnas.2015648118.
Ras dimerization is critical for Raf activation. Here we show that the Ras binding domain of Raf (Raf-RBD) induces robust Ras dimerization at low surface densities on supported lipid bilayers and, to a lesser extent, in solution as observed by size exclusion chromatography and confirmed by SAXS. Community network analysis based on molecular dynamics simulations shows robust allosteric connections linking the two Raf-RBD D113 residues located in the Galectin scaffold protein binding site of each Raf-RBD molecule and 85 Å apart on opposite ends of the dimer complex. Our results suggest that Raf-RBD binding and Ras dimerization are concerted events that lead to a high-affinity signaling complex at the membrane that we propose is an essential unit in the macromolecular assembly of higher order Ras/Raf/Galectin complexes important for signaling through the Ras/Raf/MEK/ERK pathway.
Ras 二聚化对于 Raf 的激活至关重要。在这里,我们表明 Raf 的 Ras 结合结构域(Raf-RBD)在支持的脂质双层上的低表面密度下诱导强烈的 Ras 二聚化,并且在溶液中也有一定程度的二聚化,这可以通过排阻层析和 SAXS 来证实。基于分子动力学模拟的社区网络分析显示,强烈的变构连接将两个 Raf-RBD D113 残基连接起来,这些残基位于每个 Raf-RBD 分子的半乳糖凝集素支架蛋白结合位点中,彼此相距 85Å,位于二聚体复合物的相对两端。我们的结果表明,Raf-RBD 结合和 Ras 二聚化是协同事件,导致在膜上形成高亲和力的信号复合物,我们认为这是 Ras/Raf/半乳糖凝集素复合物高级别组装的重要组成部分,对于 Ras/Raf/MEK/ERK 途径的信号传递至关重要。