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比较两种跟踪方法(最近邻法和多假设跟踪法)在计算极限下获得的鱼类精子运动测量的准确性。

Comparing accuracy of fish sperm motility measurements obtained from two computational extremes in tracking approaches: Nearest neighbor and multiple hypothesis tracking.

机构信息

Laboratório de Tecnologia da Reprodução de Animais Aquáticos Cultiváveis - LATRAAC, Universidade Estadual do Oeste do Paraná - UNIOESTE, Toledo, Brazil.

Laboratório de Biologia e Cultivo de Peixes de Água Doce - LAPAD, Universidade Federal de Santa Catarina - UFSC, Florianópolis, Brazil.

出版信息

Reprod Domest Anim. 2021 Jun;56(6):829-836. doi: 10.1111/rda.13922. Epub 2021 Mar 19.

DOI:10.1111/rda.13922
PMID:33657254
Abstract

We conducted a study to assess the accuracy of nearest neighbour (NN) and multiple hypothesis tracking (MHT) methods-which are opposite extremes in computational complexity-in determining the percentage of motile sperms and the number of sperms tracked in simulated data of fish sperm movements, and to evaluate the resulting number of tracking errors and analysis duration. Sperm tracking and swimming path assembly were assessed in 36 video clips (1 s length at 100 fps) of emulated Rhamdia quelen sperm kinetics at different densities (50, 100, 200 or 300 spermatozoa in the field of view) and motility rates (30, 60 or 90%). The MHT method accurately estimated the percentage of motile sperms, whereas NN underestimated it by up to 6.59%. Increase in sperm density reduced the number of sperms tracked from both trackers. With more than 50 sperms in the field of view, NN and MHT tracked 73% and 92% of the ground-truth sperm count, respectively. Both trackers showed a quadratic increase in tracking errors with increasing sperm density. The maximum percentage of errors at 90% motility was 12% for NN and 4.7% for MHT. The MHT tracker required up to 150 s to track 300 sperms, whereas NN completed the tracking procedure in less than 0.5 s. On maintaining a density of up to 100 sperms in the field of view, it was possible to obtain high accuracy, low number of tracking errors and an acceptable analysis duration with both tracking methods.

摘要

我们进行了一项研究,以评估最近邻 (NN) 和多假设跟踪 (MHT) 方法的准确性 - 这两种方法在计算复杂度上处于极端相反的位置 - 用于确定运动精子的百分比和在鱼类精子运动的模拟数据中跟踪的精子数量,并评估跟踪错误的数量和分析持续时间。在不同密度(视野中分别有 50、100、200 或 300 个精子)和运动率(30、60 或 90%)下,对 36 个模拟 Rhamdia quelen 精子动力学的视频片段(1 秒长度,每秒 100 帧)进行了精子跟踪和游泳路径组装。MHT 方法准确估计了运动精子的百分比,而 NN 方法最多低估了 6.59%。精子密度的增加减少了两个跟踪器跟踪的精子数量。在视野中有超过 50 个精子时,NN 和 MHT 分别跟踪了 92%和 73%的实际精子计数。随着精子密度的增加,两个跟踪器的跟踪错误呈二次增加。在 90%运动性的情况下,最大错误百分比为 NN 的 12%和 MHT 的 4.7%。MHT 跟踪器需要最多 150 秒才能跟踪 300 个精子,而 NN 在不到 0.5 秒的时间内完成了跟踪过程。在保持视野中高达 100 个精子的密度下,两种跟踪方法都可以获得高精度、低跟踪错误数量和可接受的分析持续时间。

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