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2,6-双(3,4-二羟基苯基)-3-苯乙基哌啶-4-酮的设计、对接及密度泛函理论研究

Design, docking, and DFT investigations of 2,6-bis(3,4-dihydroxyphenyl)-3-phenethylpiperidin-4-one.

作者信息

Sasitha T, John Winfred Jebaraj

机构信息

Research Department of Chemistry, St. John's College, Palayamkottai, 627 002, Tamilnadu, India.

Affiliated to Manonmaniam Sundaranar University, Abishekapatti, Tirunelveli, 627 012, Tamilnadu, India.

出版信息

Heliyon. 2021 Feb 11;7(2):e06127. doi: 10.1016/j.heliyon.2021.e06127. eCollection 2021 Feb.

DOI:10.1016/j.heliyon.2021.e06127
PMID:33659730
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7890216/
Abstract

In the present investigation, a totally of 673 newly designed 2,6-diphenyl piperidin-4-one derivatives are docked with 2B7N protein of which causes peptic ulcer disease. The docking studies revealed that 2,6-bis(3,4-dihydroxyphenyl)-3-phenethylpiperidin-4-one (BDPO) is identified as the most promising new compound with active nature against 2B7N with a binding affinity value of -8.0 Kcal/mol. The molecular structure of BDPO has been analyzed by DFT based theoretical calculations at the B3LYP/6-311++G(d,p) level of theory using the Gaussian 16W program package. The molecular electrostatic potential, Frontier molecular energy gap, and Mulliken population analysis have been used to understand the reactive site of the molecule. The stability and hyper-conjugative interactions were studied by natural bond orbital analysis (NBO) based on a second-order perturbation approach. The thermodynamic properties like thermal energy, specific heat capacity, and entropy at different temperatures were also calculated. The calculated first-order hyper polarizability results show that the title compound is 25.3 times greater than that of standard reference material, urea. So the title molecule is a good non-linear material. Also, this molecule has Van der Waals attraction and steric effect. It undergoes local excitation for the first five excitations.

摘要

在本研究中,总共673种新设计的2,6 - 二苯基哌啶 - 4 - 酮衍生物与导致消化性溃疡疾病的2B7N蛋白进行对接。对接研究表明,2,6 - 双(3,4 - 二羟基苯基)-3 - 苯乙基哌啶 - 4 - 酮(BDPO)被确定为最有前景的新型化合物,对2B7N具有活性,结合亲和力值为 - 8.0千卡/摩尔。使用高斯16W程序包,在B3LYP/6 - 311++G(d,p)理论水平上通过基于密度泛函理论(DFT)的理论计算对BDPO的分子结构进行了分析。利用分子静电势、前沿分子能隙和穆利肯布居分析来了解分子的反应位点。基于二阶微扰方法通过自然键轨道分析(NBO)研究了稳定性和超共轭相互作用。还计算了不同温度下的热力学性质,如热能、比热容和熵。计算得到的一阶超极化率结果表明,标题化合物比标准参考物质尿素大25.3倍。所以标题分子是一种良好的非线性材料。此外,该分子具有范德华吸引力和空间效应。在前五个激发态中它经历局部激发。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/940394c65948/gr10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/ba4a643f3cdd/sc1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/fe8edda6e54c/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/901b0d712a41/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/3e83d426bf04/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/95a55ac448da/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/8130fc80ed51/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/641832eaea71/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/9df99823822a/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/f8484f5fc001/gr9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/940394c65948/gr10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/ba4a643f3cdd/sc1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/fe8edda6e54c/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/901b0d712a41/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/3e83d426bf04/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/95a55ac448da/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/8130fc80ed51/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/641832eaea71/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/9df99823822a/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/f8484f5fc001/gr9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac35/7890216/940394c65948/gr10.jpg

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