Padula Anna, Bambi Marina, Mengoni Chiara, Greco Claudia, Mucci Nadia, Greco Ilaria, Masoni Alberto, Del Duca Sara, Bacci Giovanni, Santini Giacomo, Fani Renato, Zaccaroni Marco
Institute for Environmental Protection and Research, Conservation Genetics Area, Via Ca' Fornacetta 9, Ozzano dell'Emilia, 40069 Bologna, Italy.
Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy.
Biology (Basel). 2021 Feb 13;10(2):148. doi: 10.3390/biology10020148.
This study aimed to characterise the gut microbiome composition of European hares () and its potential changes after a short-term diet modification. The high sensitivity of European hare to habitat changes makes this species a good model to analyse possible alterations in gut microbiome after the introduction of additional nourishment into the diet. In total, 20 pairs were chosen for the experiments; 10 pairs formed the control group and were fed with standard fodder. The other 10 pairs represented the experimental group, whose diet was integrated with apples and carrots. The DNA from fresh faecal pellets collected after 4 days from the start of the experiment was extracted and the hypervariable regions were amplified and sequenced using the Illumina MiSeq platform. The obtained amplicon sequence variants were classified into 735 bacterial genera belonging to 285 families and 36 phyla. The control and the experimental groups appeared to have a homogenous dispersion for the two taxonomic levels analysed with the most abundant phyla represented by and No difference between control and experimental samples was detected, suggesting that the short-term variation in food availability did not alter the hares' gut microbiome. Further research is needed to estimate significant time threshold.
本研究旨在表征欧洲野兔的肠道微生物群组成及其在短期饮食调整后的潜在变化。欧洲野兔对栖息地变化高度敏感,这使得该物种成为分析在饮食中引入额外营养后肠道微生物群可能发生的变化的良好模型。总共选择了20对野兔用于实验;10对组成对照组,喂食标准饲料。另外10对代表实验组,其饮食中添加了苹果和胡萝卜。在实验开始4天后收集新鲜粪便颗粒,提取DNA,并使用Illumina MiSeq平台对高变区进行扩增和测序。获得的扩增子序列变体被分类为属于285个科和36个门的735个细菌属。在所分析的两个分类水平上,对照组和实验组似乎具有均匀的分布,最丰富的门由[具体门名缺失]和[具体门名缺失]代表。未检测到对照组和实验组样本之间的差异,这表明食物供应的短期变化并未改变野兔的肠道微生物群。需要进一步研究来估计显著的时间阈值。