State Key Laboratory of Virology, Wuhan Institute of Virology, Center for Biosafety Mega-Science, Chinese Academy of Sciences, Wuhan, 430071, China.
University of Chinese Academy of Sciences, Beijing, 10049, China.
Virol Sin. 2021 Aug;36(4):762-773. doi: 10.1007/s12250-021-00355-1. Epub 2021 Mar 8.
Baculoviruses have been widely used as a vector for expressing foreign genes. Among numerous baculoviruses, Autographa californica multiple nucleopolyhedrovirus (AcMNPV) is the most frequently used and it encodes 155 open reading frames (ORFs). Here, we systematically investigated the impact of 42 genes of AcMNPV on the production of infectious budded viruses (BVs) by constructing gene-knockout bacmids and subsequently conducting transfection and infection assays. The results showed that among the 39 functionally unverified genes and 3 recently reported genes, 36 are dispensable for infectious BV production, as the one-step growth curves of the gene-knockout viruses were not significantly different from those of the parental virus. Three genes (ac62, ac82 and ac106/107) are essential for infectious BV production, as deletions thereof resulted in complete loss of infectivity while the repaired viruses showed no significant difference in comparison to the parental virus. In addition, three genes (ac13, ac51 and ac120) are important but not essential for infectious BV production, as gene-knockout viruses produced significantly lower BV levels than that of the parental virus or repaired viruses. We then grouped the 155 AcMNPV genes into three categories (Dispensable, Essential, or Important for infectious BV production). Based on our results and previous publications, we constructed a schematic diagram of a potential mini-genome of AcMNPV, which contains only essential and important genes. The results shed light on our understanding of functional genomics of baculoviruses and provide fundamental information for future engineering of baculovirus expression system.
杆状病毒已被广泛用作表达外源基因的载体。在众多杆状病毒中,苜蓿银纹夜蛾多核型多角体病毒(AcMNPV)是使用最频繁的一种,它编码 155 个开放阅读框(ORFs)。在这里,我们通过构建基因敲除杆状病毒并随后进行转染和感染实验,系统地研究了 AcMNPV 的 42 个基因对感染性芽生病毒(BVs)产生的影响。结果表明,在 39 个功能未经证实的基因和 3 个最近报道的基因中,有 36 个对于感染性 BV 的产生是可有可无的,因为基因敲除病毒的一步生长曲线与亲本病毒没有显著差异。有 3 个基因(ac62、ac82 和 ac106/107)对于感染性 BV 的产生是必需的,因为缺失它们会导致完全丧失感染力,而修复的病毒与亲本病毒相比没有显著差异。此外,有 3 个基因(ac13、ac51 和 ac120)对于感染性 BV 的产生是重要的但不是必需的,因为基因敲除病毒产生的 BV 水平明显低于亲本病毒或修复的病毒。然后,我们将 155 个 AcMNPV 基因分为三类(可有可无、必需或对于感染性 BV 的产生很重要)。基于我们的结果和以前的出版物,我们构建了 AcMNPV 的潜在小基因组示意图,其中仅包含必需和重要的基因。这些结果阐明了我们对杆状病毒功能基因组学的理解,并为未来杆状病毒表达系统的工程提供了基础信息。