jPOST 知识库作为 shotgun 蛋白质组学的公共数据知识库。

The jPOST Repository as a Public Data Repository for Shotgun Proteomics.

机构信息

Division of bioinformatics, Niigata University Graduate School of Medical and Dental Sciences, Niigata, Japan.

Graduate School of Pharmaceutical Sciences, Kyoto University, Kyoto, Japan.

出版信息

Methods Mol Biol. 2021;2259:309-322. doi: 10.1007/978-1-0716-1178-4_20.

DOI:10.1007/978-1-0716-1178-4_20

PMID:33687724

Abstract

In recent years, mass spectrometry-based proteomics approach has made significant progress and the number of datasets related to various proteomics projects has increased worldwide. To promote the sharing and reuse of promising datasets, it is important to build an appropriate, high-quality public data repository. For this purpose, several repositories have already been created. The jPOST repository that we developed in 2016 has successfully implemented several unique features, such as fast file upload, flexible file management, and an easy-to-use interface. In addition, this repository is an official member of the ProteomeXchange Consortium established to facilitate standard data submission and global dissemination of mass spectrometry proteomics data. Our repository contributes to the global partnership for sharing and storing all the datasets related to various proteomics experiments.

摘要

近年来，基于质谱的蛋白质组学方法取得了重大进展，全球与各种蛋白质组学项目相关的数据集数量也有所增加。为了促进有前途的数据集的共享和重用，建立一个适当的、高质量的公共数据存储库非常重要。为此，已经创建了几个存储库。我们在 2016 年开发的 jPOST 存储库成功实现了几个独特的功能，如快速文件上传、灵活的文件管理和易于使用的界面。此外，这个存储库是为了促进质谱蛋白质组学数据的标准提交和全球传播而建立的 ProteomeXchange 联盟的官方成员。我们的存储库为全球合作伙伴关系做出了贡献，旨在共享和存储与各种蛋白质组学实验相关的所有数据集。