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稻叶蝉族和片角叶蝉族(半翅目:叶蝉科)线粒体基因组的比较分析揭示了明确的进化关系。

Comparative analysis of mitochondrial genomes of Nirvanini and Evacanthini (Hemiptera: Cicadellidae) reveals an explicit evolutionary relationship.

作者信息

Du Yimin, Liang Zonglei, Dietrich Christopher H, Dai Wu

机构信息

Key Laboratory of Plant Protection Resources and Pest Integrated Management of the Ministry of Education, College of Plant Protection, Northwest A&F University, Yangling, Shaanxi, China; School of Life Sciences, National Navel Orange Engineering and Technology Research Center, Gannan Normal University, Ganzhou, China.

Key Laboratory of Plant Protection Resources and Pest Integrated Management of the Ministry of Education, College of Plant Protection, Northwest A&F University, Yangling, Shaanxi, China.

出版信息

Genomics. 2021 May;113(3):1378-1385. doi: 10.1016/j.ygeno.2021.03.017. Epub 2021 Mar 11.

Abstract

Mitogenomes of five leafhopper species, Chudania hellerina and Concaveplana rufolineata in Nirvanini, Carinata rufipenna, Evacanthus danmainus and E. heimianus representing Evacanthini, were sequenced. The lengths of these five mitogenomes range from 15,044 (C. hellerina) to 15,680 bp (E. heimianus). All five mitogenomes exhibit similar base composition, gene size and codon usage of protein-coding genes. All 22 tRNA genes have typical cloverleaf secondary structures, except for trnS1 (AGN) which appears to lack the dihydrouridine arm. The two included Nirvanini species employ the anticodon TCT instead of the commonly used GCT in trnS1 (AGN). Genes nad2, atp8 and nad6 were highly variable while cox1 and cob showed the lowest nucleotide diversity. Phylogenetic analyses of two concatenated nucleotide datasets, incorporating the newly sequenced taxa and other available membracoid mitogenomes, recovered each included leafhopper subfamily as monophyletic with evacanthine tribes Nirvanini and Evacanthini forming monophyletic sister clades. A relationship among Evacanthinae, Cicadellinae and Typhlocybinae received moderate branch support.

摘要

对五个叶蝉物种的线粒体基因组进行了测序,其中包括代表隐脉叶蝉族的赫氏楚叶蝉(Chudania hellerina)和红纹凹面叶蝉(Concaveplana rufolineata),以及代表广头叶蝉族的红翅卡叶蝉(Carinata rufipenna)、丹曼广头叶蝉(Evacanthus danmainus)和海氏广头叶蝉(E. heimianus)。这五个线粒体基因组的长度从15,044 bp(赫氏楚叶蝉)到15,680 bp(海氏广头叶蝉)不等。所有五个线粒体基因组在碱基组成、基因大小和蛋白质编码基因的密码子使用方面表现出相似性。所有22个tRNA基因都具有典型的三叶草二级结构,但trnS1(AGN)似乎缺少二氢尿嘧啶臂。所包含的两个隐脉叶蝉族物种在trnS1(AGN)中使用反密码子TCT,而不是常用的GCT。基因nad2、atp8和nad6高度可变,而cox1和cob显示出最低的核苷酸多样性。对两个串联核苷酸数据集进行系统发育分析,纳入新测序的分类群和其他可用的叶蝉总科线粒体基因组,结果显示每个包含的叶蝉亚科都是单系的,隐脉叶蝉族的隐脉叶蝉属和广头叶蝉族形成单系姐妹分支。隐脉叶蝉亚科、叶蝉亚科和小叶蝉亚科之间的关系获得了中等程度的分支支持。

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