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TDP43 N 端结构域增强球状蛋白液液相分离。

N-terminal Domain of TDP43 Enhances Liquid-Liquid Phase Separation of Globular Proteins.

机构信息

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802, United States; Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, United States.

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802, United States.

出版信息

J Mol Biol. 2021 May 14;433(10):166948. doi: 10.1016/j.jmb.2021.166948. Epub 2021 Mar 18.

Abstract

Liquid-liquid phase separation (LLPS) of proteins is involved in a growing number of cellular processes. Most proteins with LLPS harbor intrinsically disordered regions (IDR), which serve as a guideline to search for cellular proteins that potentially phase separate. Herein, we reveal that oligomerization lowers the barriers for LLPS and could act as a general mechanism to enhance LLPS of proteins domains independent of IDR. Using TDP43 as a model system, we found that deleting its IDR resulted in LLPS that was dependent on the oligomerization of the N-terminal domain (NTD). Replacing TDP43's NTD with other oligomerization domains enhanced the LLPS proportionately to the state of oligomerization. In addition to TDP43, fusing NTD to other globular proteins without known LLPS behavior also drove their phase separation in a manner dependent on oligomerization. Finally, we demonstrate that heterooligomers composed of NTD-fused proteins can be driven into droplets through NTD interactions. Our results potentiate a new paradigm for using oligomerization domains as a signature to systematically identify cellular proteins with LLPS behavior, thus broadening the scope of this exciting research field.

摘要

液液相分离 (LLPS) 涉及越来越多的细胞过程。大多数具有 LLPS 的蛋白质都含有内在无序区域 (IDR),这可以作为搜索可能发生相分离的细胞蛋白的指南。本文中,我们揭示了寡聚化降低了 LLPS 的障碍,并可能作为一种增强蛋白质结构域 LLPS 的普遍机制,而与 IDR 无关。我们以 TDP43 为模型系统,发现删除其 IDR 会导致依赖于 N 端结构域 (NTD) 寡聚化的 LLPS。用其他寡聚化结构域替代 TDP43 的 NTD,会使 LLPS 比例与寡聚化状态成正比。除了 TDP43,将 NTD 与其他没有已知 LLPS 行为的球状蛋白融合也会以依赖寡聚化的方式驱动其相分离。最后,我们证明由 NTD 融合蛋白组成的异源寡聚体可以通过 NTD 相互作用被驱动进入液滴。我们的结果为使用寡聚化结构域作为系统识别具有 LLPS 行为的细胞蛋白的特征提供了一个新的范例,从而拓宽了这一令人兴奋的研究领域的范围。

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