• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

五种黍稷叶绿体全基因组的特征分析与比较分析

Characteration and comparative analysis of the whole chloroplast genomes of five common millet ().

作者信息

Cao Xiaoning, Liu Sichen, Mu Zhixin, Qiao Zhijun

机构信息

Center for Agricultural Genetic Resources Research, Shanxi Agricultural University, Taiyuan, China.

Key Laboratory of Crop Gene Resources and Germplasm Enhancement on Loess Plateau, Ministry of Agriculture, Taiyuan, Shanxi, China.

出版信息

Mitochondrial DNA B Resour. 2021 Mar 11;6(3):738-744. doi: 10.1080/23802359.2020.1866452.

DOI:10.1080/23802359.2020.1866452
PMID:33763565
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7954509/
Abstract

Common millet () is the most valuable and ancient domesticated important crops in the world. We compared five common millet complete chloroplast genomes. A complete map of the variability across the genomes of the five common millet was produced that included single nucleotide variants, InDels, and structural variants, as well as differences in simple sequence repeats and repeat sequences. Molecular phylogeny strongly supported division of the five walnut species into single monophyly with a 100% bootstrap value. The availability of these genomes will provide genetic information for identifying species and hybrids, taxonomy, phylogeny, and evolution in common millet.

摘要

黍()是世界上最有价值且最古老的重要驯化作物。我们比较了五个黍的完整叶绿体基因组。绘制了五个黍基因组变异的完整图谱,其中包括单核苷酸变异、插入缺失和结构变异,以及简单序列重复和重复序列的差异。分子系统发育有力地支持将这五个黍物种划分为具有100%自展值的单系类群。这些基因组的可得性将为黍的物种和杂种鉴定、分类学、系统发育及进化提供遗传信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b19b/7954509/4647e181ca9a/TMDN_A_1866452_F0004_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b19b/7954509/4b21be170589/TMDN_A_1866452_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b19b/7954509/184ca72e389d/TMDN_A_1866452_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b19b/7954509/edf891d925da/TMDN_A_1866452_F0003_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b19b/7954509/4647e181ca9a/TMDN_A_1866452_F0004_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b19b/7954509/4b21be170589/TMDN_A_1866452_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b19b/7954509/184ca72e389d/TMDN_A_1866452_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b19b/7954509/edf891d925da/TMDN_A_1866452_F0003_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b19b/7954509/4647e181ca9a/TMDN_A_1866452_F0004_C.jpg

相似文献

1
Characteration and comparative analysis of the whole chloroplast genomes of five common millet ().五种黍稷叶绿体全基因组的特征分析与比较分析
Mitochondrial DNA B Resour. 2021 Mar 11;6(3):738-744. doi: 10.1080/23802359.2020.1866452.
2
Completion of the Chloroplast Genomes of Five Chinese and Their Contribution to Chloroplast Phylogeny.五个中国物种叶绿体基因组的完成及其对叶绿体系统发育的贡献。
Front Plant Sci. 2017 Jan 6;7:1955. doi: 10.3389/fpls.2016.01955. eCollection 2016.
3
The complete chloroplast genome of .……的完整叶绿体基因组
Mitochondrial DNA B Resour. 2017 Jan 27;2(1):43-45. doi: 10.1080/23802359.2016.1157773.
4
Reticulate evolution in Panicum (Poaceae): the origin of tetraploid broomcorn millet, P. miliaceum.黍属(禾本科)的网状进化:四倍体黍稷(Panicum miliaceum)的起源
J Exp Bot. 2014 Jul;65(12):3165-75. doi: 10.1093/jxb/eru161. Epub 2014 Apr 10.
5
Genetic Diversity and Population Structure of Broomcorn Millet (Panicum miliaceum L.) Cultivars and Landraces in China Based on Microsatellite Markers.基于微卫星标记的中国黍稷品种和地方品种的遗传多样性与群体结构
Int J Mol Sci. 2016 Mar 14;17(3):370. doi: 10.3390/ijms17030370.
6
Recovery of chloroplast genomes from medieval millet grains excavated from the Areni-1 cave in southern Armenia.从中亚美尼亚阿雷尼-1 洞穴中挖掘出的中世纪粟粒中回收叶绿体基因组。
Sci Rep. 2022 Sep 7;12(1):15164. doi: 10.1038/s41598-022-17931-4.
7
Earliest domestication of common millet (Panicum miliaceum) in East Asia extended to 10,000 years ago.东亚最早对黍(Panicum miliaceum)的驯化可追溯到一万年前。
Proc Natl Acad Sci U S A. 2009 May 5;106(18):7367-72. doi: 10.1073/pnas.0900158106. Epub 2009 Apr 21.
8
Plant Stage, Not Drought Stress, Determines the Effect of Cultivars on Bacterial Community Diversity in the Rhizosphere of Broomcorn Millet ( L.).植物生长阶段而非干旱胁迫决定了品种对黍(Panicum miliaceum L.)根际细菌群落多样性的影响。
Front Microbiol. 2019 Apr 24;10:828. doi: 10.3389/fmicb.2019.00828. eCollection 2019.
9
SNP discovery in proso millet ( L.) using low-pass genome sequencing.利用低深度基因组测序在黍(Panicum miliaceum L.)中发现单核苷酸多态性
Plant Direct. 2022 Sep 13;6(9):e447. doi: 10.1002/pld3.447. eCollection 2022 Sep.
10
Phytolith analysis for differentiating between broomcorn millet (Panicum miliaceum) and its weed/feral type (Panicum ruderale).利用植硅体分析区分谷子(粟,Panicum miliaceum)与其杂草/野生型(狗尾草,Panicum ruderale)。
Sci Rep. 2018 Aug 29;8(1):13022. doi: 10.1038/s41598-018-31467-6.

引用本文的文献

1
Comparative chloroplast genomics of wild-type Panicum miliaceum cv. ATL1 and its M mutant line: insights for molecular breeding applications.野生型黍稷品种ATL1及其M突变系的叶绿体基因组比较:对分子育种应用的见解
BMC Plant Biol. 2025 Aug 4;25(1):1023. doi: 10.1186/s12870-025-06999-5.

本文引用的文献

1
The complete chloroplast genome sequence of Chikusichloa aquatica (Poaceae: Oryzeae).水生千金子(禾本科:稻族)的叶绿体基因组全序列
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Jul;27(4):2771-2. doi: 10.3109/19401736.2015.1053058. Epub 2015 Jul 20.
2
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.RAxML 版本 8:用于系统发育分析和大型系统发育后分析的工具。
Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.
3
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.
MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
4
CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences.CpGAVAS,一个整合的网络服务器,用于完全测序的叶绿体基因组序列的注释、可视化、分析和 GenBank 提交。
BMC Genomics. 2012 Dec 20;13:715. doi: 10.1186/1471-2164-13-715.
5
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.Geneious Basic:一个集成和可扩展的桌面软件平台,用于组织和分析序列数据。
Bioinformatics. 2012 Jun 15;28(12):1647-9. doi: 10.1093/bioinformatics/bts199. Epub 2012 Apr 27.
6
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
7
Earliest domestication of common millet (Panicum miliaceum) in East Asia extended to 10,000 years ago.东亚最早对黍(Panicum miliaceum)的驯化可追溯到一万年前。
Proc Natl Acad Sci U S A. 2009 May 5;106(18):7367-72. doi: 10.1073/pnas.0900158106. Epub 2009 Apr 21.
8
VISTA: computational tools for comparative genomics.VISTA:用于比较基因组学的计算工具
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W273-9. doi: 10.1093/nar/gkh458.
9
Automatic annotation of organellar genomes with DOGMA.使用DOGMA对细胞器基因组进行自动注释。
Bioinformatics. 2004 Nov 22;20(17):3252-5. doi: 10.1093/bioinformatics/bth352. Epub 2004 Jun 4.
10
Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs.使用miraEST组装程序在已测序的EST中进行可靠且自动化的mRNA转录本组装和SNP检测。
Genome Res. 2004 Jun;14(6):1147-59. doi: 10.1101/gr.1917404. Epub 2004 May 12.