Department of Mycobacteriology and Pulmonary Research, Pasteur Institute of Iran, Tehran, Iran.
Microbiology Research Center (MRC), Pasteur Institute of Iran, Tehran, Iran.
BMC Bioinformatics. 2021 Mar 25;22(1):154. doi: 10.1186/s12859-021-04100-z.
A growing body of evidence has shown the association between tuberculosis (TB) infection and lung cancer. However, the possible effect of strain-specific behavior of Mycobacterium tuberculosis (M.tb) population, the etiological agent of TB infection in this association has been neglected. In this context, this study was conducted to investigate this association with consideration of the genetic background of strains in the M.tb population.
We employed the elastic net penalized logistic regression model, as a statistical-learning algorithm for gene selection, to evaluate this association in 129 genes involved in TLRs and NF-κB signaling pathways in response to two different M.tb sub-lineage strains (L3-CAS1and L 4.5). Of the 129 genes, 21 were found to be associated with the two studied M.tb sub-lineages. In addition, MAPK8IP3 gene was identified as a novel gene, which has not been reported in previous lung cancer studies and may have the potential to be recognized as a novel biomarker in lung cancer investigation.
This preliminary study provides new insights into the mechanistic association between TB infection and lung cancer. Further mechanistic investigations of this association with a large number of M.tb strains, encompassing the other main M.tb lineages and using the whole transcriptome of the host cell are inevitable.
越来越多的证据表明,结核病(TB)感染与肺癌之间存在关联。然而,在这种关联中,结核分枝杆菌(M.tb)种群的菌株特异性行为的可能影响,即 TB 感染的病原体,一直被忽视。在这种情况下,本研究旨在考虑 M.tb 种群中菌株的遗传背景,调查这种关联。
我们采用弹性网络惩罚逻辑回归模型作为基因选择的统计学习算法,评估了 TLRs 和 NF-κB 信号通路中涉及的 129 个基因与两种不同的 M.tb 亚系菌株(L3-CAS1 和 L 4.5)之间的这种关联。在这 129 个基因中,有 21 个基因与研究的两种 M.tb 亚系相关。此外,MAPK8IP3 基因被确定为一个新基因,以前的肺癌研究中没有报道过,可能有潜力被认为是肺癌研究中的一个新的生物标志物。
这项初步研究为 TB 感染与肺癌之间的机制关联提供了新的见解。需要对这种关联进行进一步的机制研究,涉及大量的 M.tb 菌株,包括其他主要的 M.tb 谱系,并使用宿主细胞的全转录组。