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基于网络药理学的高通量筛选技术,从传统使用的植物中鉴定多靶点抗糖尿病化合物。

Network pharmacology based high throughput screening for identification of multi targeted anti-diabetic compound from traditionally used plants.

机构信息

Department of Molecular Biology and Biotechnology, Tezpur University, Tezpur, Assam, India.

Department of Biotechnology, Royal Global University, Guwahati, Assam, India.

出版信息

J Biomol Struct Dyn. 2022 Oct;40(17):8004-8017. doi: 10.1080/07391102.2021.1905554. Epub 2021 Mar 26.

Abstract

The incurable Type 2 diabetes mellitus (T2DM) has now been considered a pandemic with only supportive care in existence. Due to the adverse effects of available anti-diabetic drugs, there arises a great urgency to develop new drug molecules. One of the alternatives that can be considered for the treatment of T2DM are natural compounds from traditionally used herbal medicine. The present study undertakes, an integrated multidisciplinary concept of Network Pharmacology to evaluate the efficacy of potent anti-diabetic compound from traditionally used anti-diabetic plants of north east India and followed by DFT analysis. In the course of the study, 22 plant species were selected on the basis of their use in traditional medicine for the treatment of T2DM by various ethnic groups of the north eastern region of India. Initially, a library of 1053 compounds derived from these plants was generated. This was followed by network preparation between compounds and targets based on the docking result. The compounds having the best network property were considered for DFT analysis. We have identified that auraptene, a monoterpene coumarin for its activity in the management of Type 2 diabetes mellitus and deciphered its unexplored probable mechanisms. Molecular dynamics simulation of the ligand-protein complexes also reveals the stable binding of auraptene with the target proteins namely, Protein Kinase C θ, Glucocorticoid receptor, 11-β hydroxysteroid dehydrogenase 1 and Aldose Reductase, all of which form uniform interactions throughout the MD simulation trajectory. Therefore, this finding could provide new insights for the development of a new anti-diabetic drug.Communicated by Ramaswamy H. Sarma.

摘要

无法治愈的 2 型糖尿病(T2DM)现在被认为是一种大流行疾病,仅存在支持性护理。由于现有抗糖尿病药物的不良反应,开发新的药物分子迫在眉睫。可考虑用于治疗 T2DM 的替代方法之一是来自传统草药医学的天然化合物。本研究采用网络药理学的综合多学科概念,评估来自印度东北部传统抗糖尿病植物的有效抗糖尿病化合物的疗效,并进行 DFT 分析。在研究过程中,根据印度东北部不同民族传统医学用于治疗 T2DM 的用途,选择了 22 种植物作为研究对象。最初,从这些植物中生成了 1053 种化合物的库。然后根据对接结果在化合物和靶标之间进行网络准备。考虑具有最佳网络特性的化合物进行 DFT 分析。我们已经确定,佛手柑内酯是一种单萜香豆素,可用于治疗 2 型糖尿病,并解析了其未被探索的可能机制。配体-蛋白质复合物的分子动力学模拟也揭示了佛手柑内酯与靶蛋白(即蛋白激酶 Cθ、糖皮质激素受体、11-β 羟类固醇脱氢酶 1 和醛糖还原酶)的稳定结合,所有这些蛋白在整个 MD 模拟轨迹中都形成均匀的相互作用。因此,这一发现可为开发新的抗糖尿病药物提供新的见解。由 Ramaswamy H. Sarma 交流。

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