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基于网络药理学和分子对接方法探讨桑枝合剂治疗 2 型糖尿病的潜在化合物和作用靶点。

Network pharmacology and molecular docking approaches to elucidate the potential compounds and targets of Saeng-Ji-Hwang-Ko for treatment of type 2 diabetes mellitus.

机构信息

Department of Biomechatronic Engineering, Sungkyunkwan University, 2066 Seoburo, Jangangu, Suwon, 16419, Republic of Korea.

School of Pharmacy, Sungkyunkwan University, 2066 Seoburo, Jangangu, Suwon, 16419, Republic of Korea.

出版信息

Comput Biol Med. 2022 Oct;149:106041. doi: 10.1016/j.compbiomed.2022.106041. Epub 2022 Aug 25.

Abstract

BACKGROUND

Saeng-Ji-Hwang-Ko (SJHK) is a traditional Korean medicine formula derived from Donguibogam, a classic medical textbook, published in 1613. It is described as a general treatment for So-gal (wasting-thirst, ) known as type 2 diabetes mellitus (T2DM) in a modern clinical term. It is necessary to elucidate the potential compounds and targets of SJHK for T2DM treatment by conducting network pharmacology and molecular docking analyses.

METHODS

Information about the chemical constituents of SJHK were collected, and druggable compounds were screened based on oral bioavailability and drug-likeness. Putative target genes of druggable compounds and T2DM-related genes were retrieved from public databases. A compound-target network was constructed to visualize the relationship between the druggable compounds in SJHK and common targets related to T2DM. The constructed network was further investigated through Protein-Protein Interaction, Gene Ontology, Kyoto Encyclopedia of Genes and Genomes pathway analyses, and molecular docking.

RESULTS

Compound-target network analysis demonstrated that kaempferol, salicylic acid, estrone, and β-sitosterol were key compounds of SJHK with PTGS2, ESR1, PRKAA2, PRKAB1, and CYP19A1 being its key targets. Estrogen signaling, AGE-RAGE signaling, insulin resistance, non-alcoholic fatty liver disease, and TNF signaling pathway were potential pathways involved in the effect of SJHK on T2DM. Molecular docking simulations revealed that estrone and β-sitosterol had the strong binding energies for all the key target proteins.

CONCLUSIONS

This study demonstrates that network pharmacology and molecular docking analyses help to better understand the potential key compounds and targets of SJHK for treating T2DM as a complementary medicine.

SUMMARY

Type 2 diabetes mellitus (T2DM) is a complex metabolic disorder caused by genetic and/or environmental factors. There has been a growing attention to new therapeutic approaches to treat T2DM using traditional medicine as a complementary treatment which is expected to have synergistic effects with few side effects. Saeng-Ji-Hwang-Ko (SJHK) is a traditional Korean medicine (TKM) formula derived from Donguibogam, a classic medical textbook, published in 1613. It is described as a general treatment for So-gal (wasting-thirst, ) known as type 2 diabetes mellitus (T2DM) in a modern clinical term. It is necessary to elucidate the potential compounds and targets of SJHK for T2DM treatment by conducting network pharmacology and molecular docking analyses. Compound-target network analysis demonstrated that kaempferol, salicylic acid, estrone, and β-sitosterol were key compounds of SJHK with PTGS2, ESR1, PRKAA2, PRKAB1, and CYP19A1 being its key targets. Estrogen signaling, AGE-RAGE signaling, insulin resistance, non-alcoholic fatty liver disease, and TNF signaling pathway were potential pathways involved in the effect of SJHK on T2DM. Molecular docking evaluation revealed that estrone and β-sitosterol had the highest binding energies for all key target proteins, suggesting potential key compounds of SJHK. Although additional future studies including further experimental and clinical validation are needed, this study demonstrates that SJHK has a great potential for treating T2DM as a complementary medicine.

摘要

背景

圣济黄葵(SJHK)是一种传统的韩国医学配方,源自 1613 年出版的经典医学教科书《东医宝鉴》。它被描述为一种针对 So-gal(消瘦口渴)的通用疗法,在现代临床医学中称为 2 型糖尿病(T2DM)。有必要通过网络药理学和分子对接分析来阐明 SJHK 治疗 T2DM 的潜在化合物和靶点。

方法

收集 SJHK 的化学成分信息,并基于口服生物利用度和类药性筛选出可药用的化合物。从公共数据库中检索出可药用化合物和与 T2DM 相关的潜在靶基因。构建化合物-靶标网络,以可视化 SJHK 中可药用化合物与常见的与 T2DM 相关的靶标之间的关系。通过蛋白质-蛋白质相互作用、基因本体论、京都基因与基因组百科全书通路分析和分子对接进一步研究构建的网络。

结果

化合物-靶标网络分析表明,山奈酚、水杨酸、雌酮和β-谷甾醇是 SJHK 的关键化合物,PTGS2、ESR1、PRKAA2、PRKAB1 和 CYP19A1 是其关键靶标。雌激素信号、AGE-RAGE 信号、胰岛素抵抗、非酒精性脂肪性肝病和 TNF 信号通路是 SJHK 对 T2DM 作用的潜在途径。分子对接模拟表明,雌酮和β-谷甾醇与所有关键靶蛋白都具有较强的结合能。

结论

这项研究表明,网络药理学和分子对接分析有助于更好地理解 SJHK 治疗 T2DM 的潜在关键化合物和靶点,作为一种补充医学。

总结

2 型糖尿病(T2DM)是一种由遗传和/或环境因素引起的复杂代谢性疾病。人们越来越关注使用传统医学作为辅助治疗方法来治疗 T2DM 的新治疗方法,预计这种方法具有协同作用,且副作用较少。圣济黄葵(SJHK)是一种传统的韩国医学(TKM)配方,源自 1613 年出版的经典医学教科书《东医宝鉴》。它被描述为一种针对 So-gal(消瘦口渴)的通用疗法,在现代临床医学中称为 2 型糖尿病(T2DM)。有必要通过网络药理学和分子对接分析来阐明 SJHK 治疗 T2DM 的潜在化合物和靶点。化合物-靶标网络分析表明,山奈酚、水杨酸、雌酮和β-谷甾醇是 SJHK 的关键化合物,PTGS2、ESR1、PRKAA2、PRKAB1 和 CYP19A1 是其关键靶标。雌激素信号、AGE-RAGE 信号、胰岛素抵抗、非酒精性脂肪性肝病和 TNF 信号通路是 SJHK 对 T2DM 作用的潜在途径。分子对接评估表明,雌酮和β-谷甾醇与所有关键靶蛋白都具有最高的结合能,这表明 SJHK 具有潜在的关键化合物。尽管还需要进一步的实验和临床验证,但这项研究表明,SJHK 作为一种补充药物治疗 T2DM 具有很大的潜力。

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