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引入具有主导编辑功能的植物突变。

Introduction of mutations in plants with prime editing.

机构信息

Key Lab of Chinese Medicine Resources Conservation, State Administration of Traditional Chinese Medicine of the People's Republic of China, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, 151 Malianwa North Road, Haidian District, Beijing 100193, China.

Key Lab of Chinese Medicine Resources Conservation, State Administration of Traditional Chinese Medicine of the People's Republic of China, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, 151 Malianwa North Road, Haidian District, Beijing 100193, China; Engineering Research Center of Chinese Medicine Resource, Ministry of Education, 151 Malianwa North Road, Haidian District, Beijing 100193, China.

出版信息

Methods. 2021 Oct;194:83-93. doi: 10.1016/j.ymeth.2021.03.014. Epub 2021 Mar 25.

Abstract

The emergence of a clustered regularly interspaced short palindromic repeats/CRISPR-associated proteins (CRISPR/Cas) system has had a revolutionary impact on plant biology. However, this system and further developed base editing are limited by their inherent imperfection. Prime editing, a just arrival technology based on CRISPR/Cas, can directly and precisely edit a specified DNA site without double strand breaks and donor DNA by integrating an engineered reverse transcriptase (RT) with a catalytically impaired Cas9 endonuclease and introducing genetic information into prime editing guide RNA (pegRNA). In addition, it has a wider range of editing types than base editing and can install all types of editing theoretically. Prime editing was originally developed in mammalian cells and has recently been applied to plants. Here, we describe the origin of prime editing and compare it with traditional CRISPR/Cas9 and base editing; then, we exemplify it in plants, including strategies and methods. Accordingly, we generate the overall procedures of prime editing to provide instructions for its application. Furthermore, we summarize its improvements in the approach, such as optimizing the length of a primer binding site and RT template, as well as pursuing an optimal nicking site in the unedited sequence. Finally, we discuss the potential impact on domestication and improvement of agricultural crops, sustainable utilization of medicinal plants, cultivation of varieties of horticultural plants, and revelation of the genetic code, in order to offer a reference for the further study and development of prime editing.

摘要

CRISPR 系统的出现对植物生物学产生了革命性的影响。然而,该系统和进一步开发的碱基编辑技术受到其固有不完美性的限制。基于 CRISPR/Cas 的 prime editing 技术是一种刚刚出现的技术,它可以通过将工程化的逆转录酶 (RT) 与具有催化缺陷的 Cas9 内切酶整合,并将遗传信息引入 prime editing 向导 RNA (pegRNA),在不产生双链断裂和供体 DNA 的情况下,直接、精确地编辑指定的 DNA 位点。此外,它比碱基编辑具有更广泛的编辑类型,可以在理论上安装所有类型的编辑。Prime editing 最初在哺乳动物细胞中开发,最近已应用于植物。在这里,我们描述了 prime editing 的起源,并将其与传统的 CRISPR/Cas9 和碱基编辑进行了比较;然后,我们在植物中举例说明了它,包括策略和方法。相应地,我们生成了 prime editing 的总体流程,为其应用提供了指导。此外,我们总结了它在方法上的改进,例如优化引物结合位点和 RT 模板的长度,以及在未编辑序列中寻找最佳的切口位点。最后,我们讨论了它对农业作物的驯化和改良、药用植物的可持续利用、园艺植物品种的培育以及遗传密码的揭示的潜在影响,以期为 prime editing 的进一步研究和开发提供参考。

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