Takahashi Masateru, Tehseen Muhammad, Salunke Rahul, Takahashi Etsuko, Mfarrej Sara, Sobhy Mohamed A, Alhamlan Fatimah S, Hala Sharif, Ramos-Mandujano Gerardo, Al-Qahtani Ahmed A, Alofi Fadwa S, Alsomali Afrah, Hashem Anwar M, Khogeer Asim, Almontashiri Naif A M, Lee Jae Man, Mon Hiroaki, Sakashita Kosuke, Li Mo, Kusakabe Takahiro, Pain Arnab, Hamdan Samir M
Laboratory of DNA Replication and Recombination, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia.
Pathogen Genomics Laboratory, BESE Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia.
ACS Omega. 2021 Mar 15;6(11):7374-7386. doi: 10.1021/acsomega.0c05635. eCollection 2021 Mar 23.
One-step reverse-transcription quantitative polymerase chain reaction (qRT-PCR) is the most widely applied method for COVID-19 diagnostics. Notwithstanding the facts that one-step qRT-PCR is well suited for the diagnosis of COVID-19 and that there are many commercially available one-step qRT-PCR kits in the market, their high cost and unavailability due to airport closures and shipment restriction became a major bottleneck that had driven the desire to produce the key components of such kits locally. Here, we provide a simple, economical, and powerful one-step qRT-PCR kit based on patent-free, specifically tailored versions of Moloney murine leukemia virus reverse transcriptase and DNA polymerase and termed R3T (Rapid Research Response Team) one-step qRT-PCR. We also demonstrate the robustness of our enzyme production strategies and provide the optimal reaction conditions for their efficient augmentation in a one-step approach. Our kit was routinely able to reliably detect as low as 10 copies of the synthetic RNAs of SARS-CoV-2. More importantly, our kit successfully detected COVID-19 in clinical samples of broad viral titers with similar reliability and selectivity to that of the Invitrogen SuperScript III Platinum One-step qRT-PCR and TaqPath one-step RT-qPCR kits. Overall, our kit has shown robust performance in both laboratory settings and the Saudi Ministry of Health-approved testing facility.
一步法逆转录定量聚合酶链反应(qRT-PCR)是新冠病毒诊断中应用最广泛的方法。尽管一步法qRT-PCR非常适合新冠病毒诊断,且市场上有许多商用一步法qRT-PCR试剂盒,但它们的高成本以及因机场关闭和运输限制而无法获得,成为了一个主要瓶颈,促使人们希望在当地生产此类试剂盒的关键组件。在此,我们基于莫洛尼鼠白血病病毒逆转录酶和DNA聚合酶的无专利、专门定制版本,提供了一种简单、经济且强大的一步法qRT-PCR试剂盒,称为R3T(快速研究响应团队)一步法qRT-PCR。我们还展示了我们的酶生产策略的稳健性,并提供了在一步法中有效增强它们的最佳反应条件。我们的试剂盒通常能够可靠地检测低至10个拷贝的新冠病毒合成RNA。更重要的是,我们的试剂盒在广泛病毒滴度的临床样本中成功检测到了新冠病毒,其可靠性和选择性与赛默飞世尔科技的SuperScript III Platinum一步法qRT-PCR试剂盒和TaqPath一步法RT-qPCR试剂盒相似。总体而言,我们的试剂盒在实验室环境和沙特卫生部批准的检测设施中均表现出稳健的性能。