Leibniz Institut für Evolutions- und Biodiversitätsforschung, Museum für Naturkunde, Berlin, Germany.
Mol Ecol. 2021 Dec;30(23):5935-5948. doi: 10.1111/mec.15909. Epub 2021 May 3.
The technological ability to characterize genetic variation at a genome-wide scale provides an unprecedented opportunity to study the genetic underpinnings and evolutionary mechanisms that promote and sustain biodiversity. The transition from short- to long-read sequencing is particularly promising and allows a more holistic view on any changes in genetic diversity across time and space. Long-read sequencing has tremendous potential but sequencing success strongly depends on the long-range integrity of DNA molecules and therefore on the availability of high-quality tissue samples. With the scope of genomic experiments expanding and wild populations simultaneously disappearing at an unprecedented rate, access to high-quality samples may soon be a major concern for many projects. The need for high-quality biodiversity tissue archives is therefore urgent but sampling and preserving high-quality samples is not a trivial exercise. In this review, I will briefly outline how long-read sequencing can benefit the study of molecular ecology, how this will substantially increase the demand for high-quality tissues and why it is challenging to preserve DNA integrity. I will then provide an overview of preservation approaches and end with a call for support to acknowledge the efforts needed to assemble high-quality tissue archives. In doing so, I hope to simultaneously motivate field biologists to expand sampling practices and molecular biologists to develop (cost) efficient guidelines for the sampling and long-term storage of tissues. A concerted, interdisciplinary, effort is needed to catalogue the genetic variation underlying contemporary biodiversity and will eventually provide a critical resource for future studies.
在全基因组范围内对遗传变异进行特征描述的技术能力为研究促进和维持生物多样性的遗传基础和进化机制提供了前所未有的机会。从短读长测序向长读长测序的转变尤其有前景,它可以更全面地了解遗传多样性在时间和空间上的任何变化。长读长测序具有巨大的潜力,但测序的成功强烈依赖于 DNA 分子的长程完整性,因此也依赖于高质量组织样本的可用性。随着基因组实验范围的扩大和野生种群以空前的速度同时消失,获得高质量样本可能很快成为许多项目的主要关注点。因此,对高质量生物多样性组织档案的需求迫在眉睫,但采样和保存高质量样本并不是一件简单的事情。在这篇综述中,我将简要概述长读长测序如何有益于分子生态学的研究,这将如何极大地增加对高质量组织的需求,以及为什么保存 DNA 完整性具有挑战性。然后,我将概述保存方法,并以呼吁支持来承认建立高质量组织档案所需的努力结束。这样做的同时,我希望能够同时激励野外生物学家扩大采样实践,激励分子生物学家为组织的采样和长期储存制定(成本)有效的指南。需要协调一致的跨学科努力来编目当代生物多样性的遗传变异,最终为未来的研究提供关键资源。