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WARPP-web 应用程序,用于寄生植物的研究。

WARPP-web application for the research of parasitic plants.

机构信息

Plant Evolutionary Biology, Institute for Evolution and Biodiversity, University of Münster, Münster, Germany.

Plant Systematics and Biodiversity, Institute for Biology, Humboldt-Universität zu Berlin, Berlin, Germany.

出版信息

Plant Physiol. 2021 Apr 23;185(4):1374-1380. doi: 10.1093/plphys/kiaa105.

Abstract

The lifestyle of parasitic plants is associated with peculiar morphological, genetic, and physiological adaptations that existing online plant-specific resources fail to adequately represent. Here, we introduce the Web Application for the Research of Parasitic Plants (WARPP) as an online resource dedicated to advancing research and development of parasitic plant biology. WARPP is a framework to facilitate international efforts by providing a central hub of curated evolutionary, ecological, and genetic data. The first version of WARPP provides a community hub for researchers to test this web application, for which curated data revolving around the economically important Broomrape family (Orobanchaceae) is readily accessible. The initial set of WARPP online tools includes a genome browser that centralizes genomic information for sequenced parasitic plant genomes, an orthogroup summary detailing the presence and absence of orthologous genes in parasites compared with nonparasitic plants, and an ancestral trait explorer showing the evolution of life-history preferences along phylogenies. WARPP represents a project under active development and relies on the scientific community to populate the web app's database and further the development of new analysis tools. The first version of WARPP can be securely accessed at https://parasiticplants.app. The source code is licensed under GNU GPLv2 and is available at https://github.com/wickeLab/WARPP.

摘要

寄生植物的生活方式与特殊的形态、遗传和生理适应性有关,而现有的在线植物专用资源未能充分体现这些适应性。在这里,我们介绍了寄生植物研究网络应用程序(WARPP),这是一个致力于推进寄生植物生物学研究和发展的在线资源。WARPP 是一个框架,通过提供一个经过精心整理的进化、生态和遗传数据中心枢纽,促进国际合作。WARPP 的第一个版本为研究人员提供了一个社区中心,用于测试这个网络应用程序,其中可方便地获取围绕经济上重要的列当科(Orobanchaceae)的精心整理的数据。WARPP 的在线工具集包括一个基因组浏览器,它集中了已测序寄生植物基因组的基因组信息;一个直系同源群摘要,详细说明了与非寄生植物相比,寄生虫中同源基因的存在和缺失情况;以及一个祖先特征探索器,它展示了沿着系统发育进化的生活史偏好。WARPP 是一个正在积极开发的项目,依赖于科学界来填充网络应用程序的数据库,并进一步开发新的分析工具。WARPP 的第一个版本可以在 https://parasiticplants.app 安全访问。源代码根据 GNU GPLv2 获得许可,并可在 https://github.com/wickeLab/WARPP 上获得。

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本文引用的文献

1
Haustorium Induction Assay of the Parasitic Plant .寄生植物的吸器诱导测定
Bio Protoc. 2017 May 5;7(9):e2260. doi: 10.21769/BioProtoc.2260.

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