从玉米（Zea mays L.）田间土壤中分离得到的菌株IGA-FME-1的全基因组序列
Complete Genome Sequence of sp. Strain IGA-FME-1, Isolated from the Bulk Soil of Maize ( L.).
作者信息
Yu Zhenhua, de Los Santos-Villalobos Sergio, Liu Junjie, Liu Xiaobing, Parra Cota Fannie Isela, Valenzuela Ruiz Valeria, Wang Guanghua
机构信息
Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
Instituto Tecnológico de Sonora, Ciudad Obregón, Sonora, Mexico.
出版信息
Microbiol Resour Announc. 2021 Apr 1;10(13):e00192-21. doi: 10.1128/MRA.00192-21.
Abstract
Here, we present the complete genome of sp. strain IGA-FME-1 (isolated from the bulk soil of maize [ L.]). This genome consists of 5,147,837 bp, 5,219 protein-coding genes, 112 tRNAs, 13 16S rRNAs, 13 23S rRNAs, and 13 5S rRNAs, with a G+C content of 38.2%.
摘要
在此，我们展示了sp. 菌株IGA-FME-1（从玉米[L.]的土壤中分离）的完整基因组。该基因组由5,147,837个碱基对、5,219个蛋白质编码基因、112个tRNA、13个16S rRNA、13个23S rRNA和13个5S rRNA组成，G+C含量为38.2%。
相似文献
1
Complete Genome Sequence of sp. Strain IGA-FME-1, Isolated from the Bulk Soil of Maize ( L.).从玉米（Zea mays L.）田间土壤中分离得到的菌株IGA-FME-1的全基因组序列
Microbiol Resour Announc. 2021 Apr 1;10(13):e00192-21. doi: 10.1128/MRA.00192-21.
2
Draft Genome Sequence of sp. Strain IGA-FME-2, Isolated from the Bulk Soil of Soybean (Glycine max L.) in Northeast China.从中国东北大豆（Glycine max L.）的块状土壤中分离出的sp. 菌株IGA-FME-2的基因组序列草图
Microbiol Resour Announc. 2021 Apr 22;10(16):e00004-21. doi: 10.1128/MRA.00004-21.
3
Draft Genome Sequence of sp. Strain SPB7, Isolated from the Marine Sponge Spongia officinalis.从海洋海绵药用水螅体分离的SPB7菌株的基因组序列草图
Microbiol Resour Announc. 2020 Jul 23;9(30):e00358-20. doi: 10.1128/MRA.00358-20.
4
Draft Genome Sequence of a Bacterium Isolated from Hypersaline Soil in Sonora, Mexico: sp. Strain BLLS135.从墨西哥索诺拉州高盐土壤中分离出的一种细菌的基因组序列草图： sp. 菌株BLLS135 。
Microbiol Resour Announc. 2022 Feb 17;11(2):e0140920. doi: 10.1128/mra.01409-20.
5
Whole genome shotgun sequence of strain KMS 80, a rhizobacterial endophyte isolated from rice ( L.).从水稻（L.）中分离出的根际内生细菌菌株KMS 80的全基因组鸟枪法测序
3 Biotech. 2018 May;8(5):223. doi: 10.1007/s13205-018-1242-y. Epub 2018 Apr 20.
6
Complete genome and plasmid sequence of a novel sp. BD59S, a parasporal protein synthesizing bacterium.新型芽孢外蛋白质合成细菌sp. BD59S的全基因组和质粒序列
3 Biotech. 2019 Sep;9(9):318. doi: 10.1007/s13205-019-1849-7. Epub 2019 Aug 3.
7
Draft Genome Sequence of Bacillus fengqiuensis FJAT-14578, Isolated from a Soil Sample in China.从中国土壤样本中分离得到的风丘芽孢杆菌FJAT-14578的基因组序列草图
Genome Announc. 2014 Nov 6;2(6):e01126-14. doi: 10.1128/genomeA.01126-14.
8
Characterization of plant growth-promoting alkalotolerant Alcaligenes and Bacillus strains for mitigating the alkaline stress in Zea mays.用于缓解玉米碱性胁迫的促植物生长耐碱产碱杆菌属和芽孢杆菌属菌株的特性分析
Antonie Van Leeuwenhoek. 2020 Jul;113(7):889-905. doi: 10.1007/s10482-020-01399-1. Epub 2020 Mar 9.
9
Complete genome sequence of Bacillus sp. N1-1, a κ-selenocarrageenan degrading bacterium isolated from the cold seep in the South China Sea.南海冷泉区κ-卡拉胶降解菌芽孢杆菌 N1-1 的全基因组序列。
Mar Genomics. 2020 Dec;54:100771. doi: 10.1016/j.margen.2020.100771. Epub 2020 Apr 6.
10
Complete genome sequence of Bacillus ciccensis 5L6, a new species isolated from maize (Zea mays L.) seeds with anti-fungal activity.巴氏芽胞杆菌 5L6 的全基因组序列，该菌是从具有抗真菌活性的玉米（Zea mays L.）种子中分离得到的一个新物种。
Microb Pathog. 2019 Dec;137:103753. doi: 10.1016/j.micpath.2019.103753. Epub 2019 Sep 17.
本文引用的文献
1
Plant growth-promoting rhizobacteria (PGPR) improve the growth and nutrient use efficiency in maize ( L.) under water deficit conditions.植物促生根际细菌（PGPR）可提高水分亏缺条件下玉米的生长和养分利用效率。
Heliyon. 2020 Oct 7;6(10):e05106. doi: 10.1016/j.heliyon.2020.e05106. eCollection 2020 Oct.
2
ACC deaminase-producing rhizosphere competent spp. mitigate salt stress and promote growth by modulating ethylene metabolism.产生 ACC 脱氨酶的根际促生菌通过调节乙烯代谢减轻盐胁迫并促进生长。
3 Biotech. 2020 Mar;10(3):119. doi: 10.1007/s13205-020-2104-y. Epub 2020 Feb 15.
3
An endophytic strain of the genus Bacillus isolated from the seeds of maize (Zea mays L.) has antagonistic activity against maize pathogenic strains.从玉米（Zea mays L.）种子中分离出的一种芽孢杆菌属内生菌株对玉米致病菌株具有拮抗活性。
Microb Pathog. 2020 Feb 24;142:104074. doi: 10.1016/j.micpath.2020.104074.
4
sp. nov., an endophytic plant growth promoting bacterium isolated from wheat ( subsp) in the Yaqui Valley, Mexico.sp. nov.，一种从墨西哥亚基山谷的小麦（亚种）中分离出的内生植物促生细菌。
Int J Syst Evol Microbiol. 2019 Dec;69(12):3939-3945. doi: 10.1099/ijsem.0.003711.
5
Assembly of long error-prone reads using de Bruijn graphs.使用德布鲁因图组装长易错读段。
Proc Natl Acad Sci U S A. 2016 Dec 27;113(52):E8396-E8405. doi: 10.1073/pnas.1604560113. Epub 2016 Dec 12.
6
Induced maize salt tolerance by rhizosphere inoculation of Bacillus amyloliquefaciens SQR9.通过向根际接种解淀粉芽孢杆菌 SQR9 诱导玉米的耐盐性。
Physiol Plant. 2016 Sep;158(1):34-44. doi: 10.1111/ppl.12441. Epub 2016 Apr 25.
7
Circlator: automated circularization of genome assemblies using long sequencing reads.Circlator：利用长测序读段实现基因组组装的自动化环化
Genome Biol. 2015 Dec 29;16:294. doi: 10.1186/s13059-015-0849-0.
8
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
9
Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
10
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
Zotero 插件