Zach Róbert, Carr Antony M
Genome Damage and Stability Centre, School of Life Sciences, Science Park Road, University of Sussex, Falmer, Brighton, BN1 9RQ, UK.
Wellcome Open Res. 2021 May 4;6:44. doi: 10.12688/wellcomeopenres.16600.2. eCollection 2021.
experiments utilising the reconstituted eukaryotic replisome indicated that the efficiency of the leading strand replication is impaired by a moderate increase in Polδ concentration. It was hypothesised that the slower rate of the leading strand synthesis characteristic for reactions containing two-fold and four-fold increased concentration of Polδ represented a consequence of a relatively rare event, during which Polδ stochastically outcompeted Polε and, in an inefficient manner, temporarily facilitated extension of the leading strand. Inspired by this observation, we aimed to determine whether similarly increased Polδ levels influence replication dynamics using the fission yeast as a model system. To generate strains over-expressing Polδ, we utilised Cre-Lox mediated cassette exchange and integrated one or three extra genomic copies of all four Polδ genes. To estimate expression of respective Polδ genes in Polδ-overexpressing mutants, we measured relative transcript levels of , (or ), and by reverse transcription followed by quantitative PCR (RT-qPCR). To assess the impact of Polδ over-expression on cell physiology and replication dynamics, we used standard cell biology techniques and polymerase usage sequencing. We provide an evidence that two-fold and four-fold over-production of Polδ does not significantly alter growth rate, cellular morphology and S-phase duration. Polymerase usage sequencing analysis further indicates that increased Polδ expression does not change activities of Polδ, Polε and Polα at replication initiation sites and across replication termination zones. Additionally, we show that mutants over-expressing Polδ preserve WT-like distribution of replication origin efficiencies. Our experiments do not disprove the existence of opportunistic polymerase switches; however, the data indicate that, if stochastic replacement of Polε for Polδ does occur i , it represents a rare phenomenon that does not significantly influence canonical replication program.
利用重组真核复制体进行的实验表明,Polδ浓度适度增加会损害前导链复制的效率。据推测,在Polδ浓度增加两倍和四倍的反应中,前导链合成速率较慢是由于一个相对罕见的事件导致的,在此期间,Polδ随机胜过Polε,并以低效的方式暂时促进前导链的延伸。受这一观察结果的启发,我们旨在以裂殖酵母为模型系统,确定Polδ水平的类似增加是否会影响复制动力学。为了生成过表达Polδ的菌株,我们利用Cre-Lox介导的盒式交换,整合了所有四个Polδ基因的一个或三个额外基因组拷贝。为了估计Polδ过表达突变体中各个Polδ基因的表达,我们通过逆转录随后进行定量PCR(RT-qPCR)来测量、(或)、和的相对转录水平。为了评估Polδ过表达对细胞生理学和复制动力学的影响,我们使用了标准细胞生物学技术和聚合酶使用测序。我们提供的证据表明,Polδ过量产生两倍和四倍不会显著改变生长速率、细胞形态和S期持续时间。聚合酶使用测序分析进一步表明,Polδ表达增加不会改变复制起始位点和复制终止区域的Polδ、Polε和Polα的活性。此外,我们表明过表达Polδ的突变体保留了类似野生型的复制起点效率分布。我们的实验并没有否定机会性聚合酶切换的存在;然而,数据表明,如果确实发生了Polε被Polδ随机取代的情况,那么这是一种罕见的现象,不会显著影响经典的复制程序。