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FISH 寡核苷酸 5S rDNA 和寡核苷酸(AGGGTTT)在 L.中的分布。

Distribution of FISH oligo-5S rDNA and oligo-(AGGGTTT) in L.

机构信息

College of Forestry, Sichuan Agricultural University, Huimin Road 211, Wenjiang District 611130, Chengdu City, China.

出版信息

Genome. 2021 Jun;64(6):655-664. doi: 10.1139/gen-2019-0142. Epub 2021 Apr 2.

Abstract

exhibits high variation in chromosome number both within and among species. The L. karyotype was analyzed in detail using fluorescence in situ hybridization (FISH) with oligonucleotide probes for (AGT) and 5S rDNA, which were tested here for the first time. In total, 90 chromosomes were counted in prometaphase and metaphase, and all exhibited similarly intense (AGT) signals at both ends. (AGT) showed little variation and thus did not allow discrimination among chromosomes, but its location at both ends confirmed the integrity of each chromosome, thus contributing to accurate counting of the numerous, small chromosomes. Oligo-5S rDNA marked the proximal/distal regions of six chromosomes: weak signals on chromosomes 7 and 8, slightly stronger signals on chromosomes 15 and 16, and very strong signals on chromosomes 17 and 18. Therefore, 5S rDNA could assist in chromosome identification in . Metaphase chromosome lengths ranged from 3.00 to 1.18 μm, indicating small chromosomes. The ratios of longest to shortest chromosome length in prometaphase and metaphase were 2.58 and 2.54, respectively, indicating karyotype asymmetry in . These results provide an exact chromosome number and a physical map, which will be useful for genome assembly and contribute to molecular cytogenetics in the genus .

摘要

表现出高度的染色体数目变异,无论是在种内还是种间。利用寡核苷酸探针(AGT)和 5S rDNA 的荧光原位杂交(FISH)对 L. 核型进行了详细分析,这是首次在这里进行测试。在前期和中期总共计数了 90 条染色体,所有染色体的两端都显示出相似的强烈(AGT)信号。(AGT)变异很小,因此无法区分染色体,但它位于两端,证实了每条染色体的完整性,从而有助于准确计数大量的小染色体。寡核苷酸 5S rDNA 标记了 6 条染色体的近端/远端区域:染色体 7 和 8 上的信号较弱,染色体 15 和 16 上的信号稍强,染色体 17 和 18 上的信号非常强。因此,5S rDNA 可以辅助 L. 中的染色体识别。中期染色体长度范围为 3.00 至 1.18 μm,表明染色体较小。前期和中期最长染色体与最短染色体长度之比分别为 2.58 和 2.54,表明 L. 中的核型不对称。这些结果提供了确切的染色体数目和物理图谱,这将有助于基因组组装,并为该属的分子细胞遗传学做出贡献。

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