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用于检测物种腹部和翅膀中基因表达模式的RNA杂交

RNA Hybridization for Detecting Gene Expression Patterns in the Abdomens and Wings of Species.

作者信息

Shittu Mujeeb, Steenwinkel Tessa, Dion William, Ostlund Nathan, Raja Komal, Werner Thomas

机构信息

Department of Biological Sciences, Michigan Technological University, 740 Dow Building, Houghton, MI 49931, USA.

Integrative Systems Biology Graduate Program, University of Pittsburgh School of Medicine, Biomedical Science, Tower 3, 3501 Fifth Avenue, Pittsburgh, PA 15213, USA.

出版信息

Methods Protoc. 2021 Mar 10;4(1):20. doi: 10.3390/mps4010020.

DOI:10.3390/mps4010020
PMID:33801802
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8005959/
Abstract

RNA hybridization (ISH) is used to visualize spatio-temporal gene expression patterns with broad applications in biology and biomedicine. Here we provide a protocol for mRNA ISH in developing pupal wings and abdomens for model and non-model species. We describe best practices in pupal staging, tissue preparation, probe design and synthesis, imaging of gene expression patterns, and image-editing techniques. This protocol has been successfully used to investigate the roles of genes underlying the evolution of novel color patterns in non-model species.

摘要

RNA杂交(原位杂交)用于可视化时空基因表达模式,在生物学和生物医学中有广泛应用。在此,我们提供了一种在模型和非模型物种发育中的蛹翅和腹部进行mRNA原位杂交的方案。我们描述了蛹期分期、组织制备、探针设计与合成、基因表达模式成像以及图像编辑技术方面的最佳实践。该方案已成功用于研究非模型物种中新颜色模式进化背后基因的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ac1/8005959/ac2e3a1b37e4/mps-04-00020-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ac1/8005959/1c4fdc2f2afb/mps-04-00020-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ac1/8005959/58faeda1f866/mps-04-00020-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ac1/8005959/9a8e49ff3e07/mps-04-00020-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ac1/8005959/30e0fbe8c476/mps-04-00020-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ac1/8005959/c46f568e3dd9/mps-04-00020-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ac1/8005959/a0780b593102/mps-04-00020-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ac1/8005959/ac2e3a1b37e4/mps-04-00020-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ac1/8005959/1c4fdc2f2afb/mps-04-00020-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ac1/8005959/58faeda1f866/mps-04-00020-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ac1/8005959/9a8e49ff3e07/mps-04-00020-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ac1/8005959/30e0fbe8c476/mps-04-00020-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ac1/8005959/c46f568e3dd9/mps-04-00020-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ac1/8005959/a0780b593102/mps-04-00020-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ac1/8005959/ac2e3a1b37e4/mps-04-00020-g007.jpg

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本文引用的文献

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PLoS One. 2022 Dec 19;17(12):e0279061. doi: 10.1371/journal.pone.0279061. eCollection 2022.
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The modular expression patterns of three pigmentation genes prefigure unique abdominal morphologies seen among three Drosophila species.三种色素基因的模块化表达模式预示着三种果蝇物种中独特的腹部形态。
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An Atlas of Transcription Factors Expressed in Male Pupal Terminalia of .
在果蝇腹部复杂颜色模式形成中色素基因的调控。
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雄蛹生殖附器中转录因子表达图谱
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Augmentation of a wound response element accompanies the origin of a Hox-regulated Drosophila abdominal pigmentation trait.伤口反应元件的增强伴随着Hox调控的果蝇腹部色素沉着性状的起源。
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Whole-Mount and Section In Situ Hybridization in Mouse Embryos for Detecting mRNA Expression and Localization.用于检测mRNA表达和定位的小鼠胚胎全胚胎和切片原位杂交
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Methods for Staging Pupal Periods and Measurement of Wing Pigmentation of Drosophila guttifera.黑腹果蝇蛹期分期及翅色素沉着测量方法
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Wingless is a positive regulator of eyespot color patterns in Bicyclus anynana butterflies.无翅基因是猫眼蛱蝶眼斑颜色图案的正向调节因子。
Dev Biol. 2017 Sep 1;429(1):177-185. doi: 10.1016/j.ydbio.2017.06.030. Epub 2017 Jun 28.
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Gain of cis-regulatory activities underlies novel domains of wingless gene expression in Drosophila.顺式调控活性的增加是果蝇中无翅基因表达新区域的基础。
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