• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于结构的PIM1抑制剂虚拟筛选及从天然产物中设计具有抗癌活性的全新抑制剂

Structure-Based Virtual Screening and De Novo Design of PIM1 Inhibitors with Anticancer Activity from Natural Products.

作者信息

Park Hwangseo, Jeon Jinwon, Kim Kewon, Choi Soyeon, Hong Sungwoo

机构信息

Department of Bioscience and Biotechnology and Institute of Anticancer Medicine Development, Sejong University, 209 Neungdong-ro, Kwangjin-gu, Seoul 05006, Korea.

Center for Catalytic Hydrocarbon Functionalizations, Institute for Basic Science (IBS), Daejeon 34141, Korea.

出版信息

Pharmaceuticals (Basel). 2021 Mar 18;14(3):275. doi: 10.3390/ph14030275.

DOI:10.3390/ph14030275
PMID:33803840
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8003278/
Abstract

BACKGROUND

the proviral insertion site of Moloney murine leukemia (PIM) 1 kinase has served as a therapeutic target for various human cancers due to the enhancement of cell proliferation and the inhibition of apoptosis.

METHODS

to identify effective PIM1 kinase inhibitors, structure-based virtual screening of natural products of plant origin and de novo design were carried out using the protein-ligand binding free energy function improved by introducing an adequate dehydration energy term.

RESULTS

as a consequence of subsequent enzyme inhibition assays, four classes of PIM1 kinase inhibitors were discovered, with the biochemical potency ranging from low-micromolar to sub-micromolar levels. The results of extensive docking simulations showed that the inhibitory activity stemmed from the formation of multiple hydrogen bonds in combination with hydrophobic interactions in the ATP-binding site. Optimization of the biochemical potency by chemical modifications of the 2-benzylidenebenzofuran-3(2)-one scaffold led to the discovery of several nanomolar inhibitors with antiproliferative activities against human breast cancer cell lines.

CONCLUSIONS

these new PIM1 kinase inhibitors are anticipated to serve as a new starting point for the development of anticancer medicine.

摘要

背景

莫洛尼鼠白血病(PIM)1激酶的前病毒插入位点因能促进细胞增殖和抑制细胞凋亡,已成为多种人类癌症的治疗靶点。

方法

为了鉴定有效的PIM1激酶抑制剂,利用通过引入适当脱水能项改进的蛋白质-配体结合自由能函数,对植物源天然产物进行基于结构的虚拟筛选和从头设计。

结果

后续酶抑制试验的结果发现了四类PIM1激酶抑制剂,其生化活性范围从低微摩尔到亚微摩尔水平。广泛的对接模拟结果表明,抑制活性源于在ATP结合位点形成多个氢键并伴有疏水相互作用。通过对2-亚苄基苯并呋喃-3(2)-酮支架进行化学修饰来优化生化活性,从而发现了几种对人乳腺癌细胞系具有抗增殖活性的纳摩尔抑制剂。

结论

这些新型PIM1激酶抑制剂有望成为抗癌药物开发的新起点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be69/8003278/dbb066e2d9b0/pharmaceuticals-14-00275-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be69/8003278/005a04360278/pharmaceuticals-14-00275-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be69/8003278/44885b0c6b96/pharmaceuticals-14-00275-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be69/8003278/20ca57ef4251/pharmaceuticals-14-00275-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be69/8003278/fbff6f5eef15/pharmaceuticals-14-00275-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be69/8003278/a7a2b4c0d5e2/pharmaceuticals-14-00275-sch001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be69/8003278/dbb066e2d9b0/pharmaceuticals-14-00275-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be69/8003278/005a04360278/pharmaceuticals-14-00275-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be69/8003278/44885b0c6b96/pharmaceuticals-14-00275-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be69/8003278/20ca57ef4251/pharmaceuticals-14-00275-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be69/8003278/fbff6f5eef15/pharmaceuticals-14-00275-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be69/8003278/a7a2b4c0d5e2/pharmaceuticals-14-00275-sch001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be69/8003278/dbb066e2d9b0/pharmaceuticals-14-00275-g005.jpg

相似文献

1
Structure-Based Virtual Screening and De Novo Design of PIM1 Inhibitors with Anticancer Activity from Natural Products.基于结构的PIM1抑制剂虚拟筛选及从天然产物中设计具有抗癌活性的全新抑制剂
Pharmaceuticals (Basel). 2021 Mar 18;14(3):275. doi: 10.3390/ph14030275.
2
Phytoconstituents and Medicinal Plants for Anticancer Drug Discovery: Computational Identification of Potent Inhibitors of PIM1 Kinase.用于抗癌药物发现的植物成分与药用植物:PIM1激酶强效抑制剂的计算鉴定
OMICS. 2021 Sep;25(9):580-590. doi: 10.1089/omi.2021.0107. Epub 2021 Aug 26.
3
Systematic Computational Design and Identification of Low Picomolar Inhibitors of Aurora Kinase A.系统计算设计和鉴定 Aurora 激酶 A 的低皮摩尔抑制剂。
J Chem Inf Model. 2018 Mar 26;58(3):700-709. doi: 10.1021/acs.jcim.7b00671. Epub 2018 Feb 16.
4
3D QSAR studies, molecular docking and ADMET evaluation, using thiazolidine derivatives as template to obtain new inhibitors of PIM1 kinase.基于噻唑烷衍生物模板的 3D QSAR 研究、分子对接和 ADMET 评估,以获得新的 PIM1 激酶抑制剂。
Comput Biol Chem. 2018 Jun;74:201-211. doi: 10.1016/j.compbiolchem.2018.03.008. Epub 2018 Mar 12.
5
Structure Guided Optimization, in Vitro Activity, and in Vivo Activity of Pan-PIM Kinase Inhibitors.泛PIM激酶抑制剂的结构导向优化、体外活性及体内活性
ACS Med Chem Lett. 2013 Oct 15;4(12):1193-7. doi: 10.1021/ml400307j. eCollection 2013 Dec 12.
6
Structure-based design of low-nanomolar PIM kinase inhibitors.基于结构的低纳摩尔PIM激酶抑制剂设计
Bioorg Med Chem Lett. 2015 Feb 1;25(3):474-80. doi: 10.1016/j.bmcl.2014.12.041. Epub 2014 Dec 19.
7
Discovery of Dual Inhibitors for Wild Type and D816V Mutant of c-KIT Kinase through Virtual and Biochemical Screening of Natural Products.通过天然产物的虚拟筛选和生化筛选发现 c-KIT 激酶野生型和 D816V 突变体的双重抑制剂。
J Nat Prod. 2016 Feb 26;79(2):293-9. doi: 10.1021/acs.jnatprod.5b00851. Epub 2016 Jan 25.
8
Using insights into Pim1 structure to design new anticancer drugs.利用对 Pim1 结构的深入了解来设计新型抗癌药物。
Curr Pharm Des. 2010;16(35):3964-78. doi: 10.2174/138161210794454996.
9
Discovery of Low Micromolar Dual Inhibitors for Wild Type and L1196M Mutant of Anaplastic Lymphoma Kinase through Structure-Based Virtual Screening.通过基于结构的虚拟筛选发现间变性淋巴瘤激酶野生型和L1196M突变体的低微摩尔双抑制剂
J Chem Inf Model. 2016 Apr 25;56(4):802-10. doi: 10.1021/acs.jcim.6b00026. Epub 2016 Apr 4.
10
Computational design and discovery of nanomolar inhibitors of IκB kinase β.计算设计和发现 IκB 激酶 β 的纳摩尔抑制剂。
J Am Chem Soc. 2015 Jan 14;137(1):337-48. doi: 10.1021/ja510636t. Epub 2015 Jan 2.

引用本文的文献

1
Scipion-Chem: An Open Platform for Virtual Drug Screening.Scipion-Chem:一个用于虚拟药物筛选的开放平台。
J Chem Inf Model. 2023 Dec 25;63(24):7873-7885. doi: 10.1021/acs.jcim.3c01085. Epub 2023 Dec 5.
2
Combining machine learning and structure-based approaches to develop oncogene PIM kinase inhibitors.结合机器学习和基于结构的方法来开发致癌基因PIM激酶抑制剂。
Front Chem. 2023 Mar 10;11:1137444. doi: 10.3389/fchem.2023.1137444. eCollection 2023.

本文引用的文献

1
Virtual Screening and Design with Machine Intelligence Applied to Pim-1 Kinase Inhibitors.虚拟筛选与机器智能设计在 Pim-1 激酶抑制剂中的应用。
Mol Inform. 2020 Sep;39(9):e2000109. doi: 10.1002/minf.202000109. Epub 2020 Jul 9.
2
Rational Computational Design of Fourth-Generation EGFR Inhibitors to Combat Drug-Resistant Non-Small Cell Lung Cancer.理性计算设计第四代表皮生长因子受体抑制剂以对抗耐药性非小细胞肺癌。
Int J Mol Sci. 2020 Dec 7;21(23):9323. doi: 10.3390/ijms21239323.
3
Kinase and GPCR polypharmacological approach for the identification of efficient anticancer medicines.
用于鉴定高效抗癌药物的激酶和G蛋白偶联受体多药理学方法。
Org Biomol Chem. 2020 Oct 28;18(41):8402-8413. doi: 10.1039/d0ob01917h.
4
PIM1 is responsible for IL-6-induced breast cancer cell EMT and stemness via c-myc activation.PIM1 通过激活 c-myc 促进 IL-6 诱导的乳腺癌细胞 EMT 和干性。
Breast Cancer. 2019 Sep;26(5):663-671. doi: 10.1007/s12282-019-00966-3. Epub 2019 Apr 15.
5
3D QSAR studies, molecular docking and ADMET evaluation, using thiazolidine derivatives as template to obtain new inhibitors of PIM1 kinase.基于噻唑烷衍生物模板的 3D QSAR 研究、分子对接和 ADMET 评估,以获得新的 PIM1 激酶抑制剂。
Comput Biol Chem. 2018 Jun;74:201-211. doi: 10.1016/j.compbiolchem.2018.03.008. Epub 2018 Mar 12.
6
Theoretical Analysis of Activity Cliffs among Benzofuranone-Class Pim1 Inhibitors Using the Fragment Molecular Orbital Method with Molecular Mechanics Poisson-Boltzmann Surface Area (FMO+MM-PBSA) Approach.苯并呋喃酮类 Pim1 抑制剂活性悬崖的理论分析:采用片段分子轨道方法结合分子力学泊松-玻尔兹曼表面面积(FMO+MM-PBSA)方法。
J Chem Inf Model. 2017 Dec 26;57(12):2996-3010. doi: 10.1021/acs.jcim.7b00110. Epub 2017 Dec 1.
7
From PIM1 to PI3Kδ via GSK3β: Target Hopping through the Kinome.从PIM1到PI3Kδ,经由GSK3β:通过激酶组进行靶点跳跃
ACS Med Chem Lett. 2017 Sep 7;8(10):1093-1098. doi: 10.1021/acsmedchemlett.7b00296. eCollection 2017 Oct 12.
8
Structural analysis of PIM1 kinase complexes with ATP-competitive inhibitors.PIM1 激酶复合物与 ATP 竞争抑制剂的结构分析。
Sci Rep. 2017 Oct 17;7(1):13399. doi: 10.1038/s41598-017-13557-z.
9
Discovery of N-substituted 7-azaindoles as PIM1 kinase inhibitors - Part I.N-取代的7-氮杂吲哚作为PIM1激酶抑制剂的发现 - 第一部分。
Bioorg Med Chem Lett. 2017 Oct 15;27(20):4730-4734. doi: 10.1016/j.bmcl.2017.08.069. Epub 2017 Sep 18.
10
Protein-Ligand Empirical Interaction Components for Virtual Screening.用于虚拟筛选的蛋白质-配体经验性相互作用成分
J Chem Inf Model. 2017 Aug 28;57(8):1793-1806. doi: 10.1021/acs.jcim.7b00017. Epub 2017 Jul 18.