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德国高盐钾尾矿堆周围生物结皮中微生物的多样性

Diversity of Microorganisms in Biocrusts Surrounding Highly Saline Potash Tailing Piles in Germany.

作者信息

Pushkareva Ekaterina, Sommer Veronika, Barrantes Israel, Karsten Ulf

机构信息

Department of Applied Ecology and Phycology, Institute of Biological Sciences, University of Rostock, 18059 Rostock, Germany.

Department of Biology, Botanical Institute, University of Cologne, 50674 Cologne, Germany.

出版信息

Microorganisms. 2021 Mar 30;9(4):714. doi: 10.3390/microorganisms9040714.

Abstract

Potash tailing piles located in Germany represent extremely hypersaline locations that negatively affect neighbouring environments and limit the development of higher vegetation. However, biocrusts, as cryptogamic covers, inhabit some of these areas and provide essential ecological functions, but, nevertheless, they remain poorly described. Here, we applied high-throughput sequencing (HTS) and targeted four groups of microorganisms: bacteria, cyanobacteria, fungi and other eukaryotes. The sequencing of the 16S rRNA gene revealed the dominance of Proteobacteria, Cyanobacteria and Actinobacteria. Additionally, we applied yanobacteria-specific primers for a detailed assessment of the cyanobacterial community, which was dominated by members of the filamentous orders Synechococcales and Oscillatoriales. Furthermore, the majority of reads in the studied biocrusts obtained by sequencing of the 18S rRNA gene belonged to eukaryotic microalgae. In addition, sequencing of the internal rDNA transcribed spacer region (ITS) showed the dominance of Ascomycota within the fungal community. Overall, these molecular data provided the first detailed overview of microorganisms associated with biocrusts inhabiting highly saline potash tailing piles and showed the dissimilarities in microbial diversity among the samples.

摘要

位于德国的钾盐尾矿堆是盐分极高的区域,对周边环境产生负面影响,并限制了高等植被的生长。然而,作为隐花植物覆盖层的生物结皮存在于其中一些区域,并发挥着重要的生态功能,但目前对其描述仍然很少。在此,我们应用高通量测序(HTS)技术,针对细菌、蓝细菌、真菌和其他真核生物这四类微生物进行研究。16S rRNA基因测序结果显示,变形菌门、蓝细菌门和放线菌门占主导地位。此外,我们使用蓝细菌特异性引物对蓝细菌群落进行详细评估,结果表明丝状的聚球藻目和颤藻目成员占主导。此外,通过18S rRNA基因测序获得的研究生物结皮中的大多数读数属于真核微藻。另外,内部rDNA转录间隔区(ITS)测序显示,子囊菌门在真菌群落中占主导。总体而言,这些分子数据首次详细概述了与栖息在高盐钾盐尾矿堆上的生物结皮相关的微生物,并展示了样本间微生物多样性的差异。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4fed/8066527/c20fb3eb46cc/microorganisms-09-00714-g001.jpg

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