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单细胞 RNA 测序数据集解析人类肝内 NK 细胞功能。

Insights Into Human Intrahepatic NK Cell Function From Single Cell RNA Sequencing Datasets.

机构信息

School of Medicine, Trinity Translational Medicine Institute, Trinity College Dublin, Dublin, Ireland.

Department of Biology, Kathleen Lonsdale Institute for Human Health Research, Maynooth University, Maynooth, Ireland.

出版信息

Front Immunol. 2021 Mar 22;12:649311. doi: 10.3389/fimmu.2021.649311. eCollection 2021.

DOI:10.3389/fimmu.2021.649311
PMID:33828559
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8019706/
Abstract

Diverse populations of natural killer (NK) cells have been identified in circulating peripheral blood and a wide variety of different tissues and organs. These tissue-resident NK cell populations are phenotypically distinct from circulating NK cells, however, functional descriptions of their roles within tissues are lacking. Recent advances in single cell RNA sequencing (scRNA-seq) have enabled detailed transcriptional profiling of tissues at the level of single cells and provide the opportunity to explore NK cell diversity within tissues. This review explores potential novel functions of human liver-resident (lr)NK cells identified in human liver scRNA-seq studies. By comparing these datasets we identified up-regulated and down-regulated genes associated with lrNK cells clusters. These genes encode a number of activating and inhibiting receptors, as well as signal transduction molecules, which highlight potential unique pathways that lrNK cells utilize to respond to stimuli within the human liver. This unique receptor repertoire of lrNK cells may confer the ability to regulate a number of immune cell populations, such as circulating monocytes and T cells, while avoiding activation by liver hepatocytes and Kupffer cells. Validating the expression of these receptors on lrNK cells and the proposed cellular interactions within the human liver will expand our understanding of the liver-specific homeostatic roles of this tissue-resident immune cell population.

摘要

天然杀伤 (NK) 细胞的多种群体已在循环外周血和广泛的不同组织和器官中被鉴定出来。这些组织驻留 NK 细胞群体在表型上与循环 NK 细胞不同,但它们在组织内的功能描述尚缺乏。单细胞 RNA 测序 (scRNA-seq) 的最新进展使人们能够在单细胞水平上对组织进行详细的转录谱分析,并提供了在组织内探索 NK 细胞多样性的机会。本综述探讨了人类肝脏 scRNA-seq 研究中鉴定的人肝驻留 (lr)NK 细胞的潜在新功能。通过比较这些数据集,我们确定了与 lrNK 细胞簇相关的上调和下调基因。这些基因编码了许多激活和抑制受体以及信号转导分子,这突出了 lrNK 细胞利用的潜在独特途径,以响应人类肝脏内的刺激。lrNK 细胞的这种独特的受体谱可能赋予其调节循环单核细胞和 T 细胞等多种免疫细胞群体的能力,同时避免被肝脏肝细胞和库普弗细胞激活。验证这些受体在 lrNK 细胞上的表达以及在人类肝脏内提出的细胞相互作用将扩展我们对这种组织驻留免疫细胞群体的肝脏特异性稳态作用的理解。

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