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新冠病毒的洲际传播与当地人口扩张。

Intercontinental transmission and local demographic expansion of SARS-CoV-2.

机构信息

State Key Laboratory of Grassland Agro-Ecosystem, Institute of Innovation Ecology & School of Life Sciences, Lanzhou University, Lanzhou, China.

College of Life Science, Yunnan University, Kunming650500, China.

出版信息

Epidemiol Infect. 2021 Apr 13;149:e94. doi: 10.1017/S0950268821000777.

DOI:10.1017/S0950268821000777
PMID:33845928
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8060534/
Abstract

The global outbreak of coronavirus disease 2019 (COVID-19) is greatly threatening the public health in the world. We reconstructed global transmissions and potential demographic expansions of severe acute respiratory syndrome coronavirus 2 based on genomic information. We found that intercontinental transmissions were rare in January and early February but drastically increased since late February. After world-wide implements of travel restrictions, the transmission frequencies decreased to a low level in April. We identified a total of 88 potential demographic expansions over the world based on the star-radiative networks and 75 of them were found in Europe and North America. The expansion numbers peaked in March and quickly dropped since April. These findings are highly concordant with epidemic reports and modelling results and highlight the significance of quarantine validity on the global spread of COVID-19. Our analyses indicate that the travel restrictions and social distancing measures are effective in containing the spread of COVID-19.

摘要

2019 年冠状病毒病(COVID-19)在全球范围内的爆发,对世界公共卫生造成了极大威胁。我们基于基因组信息,重建了严重急性呼吸综合征冠状病毒 2 的全球传播和潜在的人口扩张情况。我们发现,1 月和 2 月初的洲际传播很少,但自 2 月下旬以来急剧增加。在全球范围内实施旅行限制后,4 月份的传播频率降至较低水平。我们通过星状辐射网络总共确定了全球 88 个潜在的人口扩张,其中 75 个在欧洲和北美。扩张数量在 3 月达到峰值,自 4 月以来迅速下降。这些发现与流行报告和建模结果高度一致,突出了检疫有效性在 COVID-19 全球传播中的重要性。我们的分析表明,旅行限制和社会距离措施在遏制 COVID-19 的传播方面是有效的。

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1
Intercontinental transmission and local demographic expansion of SARS-CoV-2.新冠病毒的洲际传播与当地人口扩张。
Epidemiol Infect. 2021 Apr 13;149:e94. doi: 10.1017/S0950268821000777.
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本文引用的文献

1
Assessing Uncertainty in the Rooting of the SARS-CoV-2 Phylogeny.评估 SARS-CoV-2 系统发育树根不确定性。
Mol Biol Evol. 2021 Apr 13;38(4):1537-1543. doi: 10.1093/molbev/msaa316.
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Phylogeography of 27,000 SARS-CoV-2 Genomes: Europe as the Major Source of the COVID-19 Pandemic.27000个新冠病毒基因组的系统发育地理学:欧洲是新冠疫情的主要源头
Microorganisms. 2020 Oct 29;8(11):1678. doi: 10.3390/microorganisms8111678.
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Social distancing to slow the US COVID-19 epidemic: Longitudinal pretest-posttest comparison group study.
社交距离措施减缓美国 COVID-19 疫情:纵向预测试-后测试比较组研究。
PLoS Med. 2020 Aug 11;17(8):e1003244. doi: 10.1371/journal.pmed.1003244. eCollection 2020 Aug.
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A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology.一种用于 SARS-CoV-2 谱系的动态命名建议,以辅助基因组流行病学研究。
Nat Microbiol. 2020 Nov;5(11):1403-1407. doi: 10.1038/s41564-020-0770-5. Epub 2020 Jul 15.
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The effect of large-scale anti-contagion policies on the COVID-19 pandemic.大规模防疫政策对 COVID-19 大流行的影响。
Nature. 2020 Aug;584(7820):262-267. doi: 10.1038/s41586-020-2404-8. Epub 2020 Jun 8.
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Science. 2020 Jul 17;369(6501):297-301. doi: 10.1126/science.abc1917. Epub 2020 May 29.
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Reply to Sánchez-Pacheco et al., Chookajorn, and Mavian et al.: Explaining phylogenetic network analysis of SARS-CoV-2 genomes.回复桑切斯 - 帕切科等人、乔卡乔恩以及马维安等人:关于新冠病毒基因组的系统发育网络分析解释
Proc Natl Acad Sci U S A. 2020 Jun 9;117(23):12524-12525. doi: 10.1073/pnas.2007433117. Epub 2020 May 21.
8
Strong Social Distancing Measures In The United States Reduced The COVID-19 Growth Rate.美国采取了强有力的社交隔离措施,降低了 COVID-19 的增长率。
Health Aff (Millwood). 2020 Jul;39(7):1237-1246. doi: 10.1377/hlthaff.2020.00608. Epub 2020 May 14.
9
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable.采样偏差和错误的溯源使新冠病毒感染的系统发育网络追踪不可靠。
Proc Natl Acad Sci U S A. 2020 Jun 9;117(23):12522-12523. doi: 10.1073/pnas.2007295117. Epub 2020 May 7.
10
Median-joining network analysis of SARS-CoV-2 genomes is neither phylogenetic nor evolutionary.严重急性呼吸综合征冠状病毒2(SARS-CoV-2)基因组的中介邻接网络分析既非系统发育分析,也非进化分析。
Proc Natl Acad Sci U S A. 2020 Jun 9;117(23):12518-12519. doi: 10.1073/pnas.2007062117. Epub 2020 May 7.