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中性准种进化与最大熵随机游走。

Neutral quasispecies evolution and the maximal entropy random walk.

作者信息

Smerlak M

机构信息

Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany. Email:

出版信息

Sci Adv. 2021 Apr 14;7(16). doi: 10.1126/sciadv.abb2376. Print 2021 Apr.

Abstract

Even if they have no impact on phenotype, neutral mutations are not equivalent in the eyes of evolution: A robust neutral variant-one which remains functional after further mutations-is more likely to spread in a large, diverse population than a fragile one. Quasispecies theory shows that the equilibrium frequency of a genotype is proportional to its eigenvector centrality in the neutral network. This paper explores the link between the selection for mutational robustness and the navigability of neutral networks. I show that sequences of neutral mutations follow a "maximal entropy random walk," a canonical Markov chain on graphs with nonlocal, nondiffusive dynamics. I revisit M. Smith's word-game model of evolution in this light, finding that the likelihood of certain sequences of substitutions can decrease with the population size. These counterintuitive results underscore the fertility of the interface between evolutionary dynamics, information theory, and physics.

摘要

即使中性突变对表型没有影响,但在进化的视角下它们并非等同:一个稳健的中性变体——在进一步突变后仍保持功能的变体——比一个脆弱的变体更有可能在一个庞大、多样的种群中传播。准种理论表明,一个基因型的平衡频率与其在中性网络中的特征向量中心性成正比。本文探讨了对突变稳健性的选择与中性网络的可导航性之间联系。我表明,中性突变序列遵循“最大熵随机游走”,这是一种在具有非局部、非扩散动力学的图上的典型马尔可夫链。我据此重新审视了M. 史密斯的进化文字游戏模型,发现某些替换序列的可能性会随着种群规模的增大而降低。这些违反直觉的结果凸显了进化动力学、信息论和物理学之间交叉领域的丰富性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cc3b/8046360/13074023648b/abb2376-F1.jpg

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