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迈向醋酸菌可调控表达系统之路:靶基因表达及应用案例

On the way toward regulatable expression systems in acetic acid bacteria: target gene expression and use cases.

作者信息

Fricke Philipp Moritz, Klemm Angelika, Bott Michael, Polen Tino

机构信息

IBG-1: Biotechnology, Institute of Bio- and Geosciences, Forschungszentrum Jülich GmbH, 52425, Jülich, Germany.

出版信息

Appl Microbiol Biotechnol. 2021 May;105(9):3423-3456. doi: 10.1007/s00253-021-11269-z. Epub 2021 Apr 15.

Abstract

Acetic acid bacteria (AAB) are valuable biocatalysts for which there is growing interest in understanding their basics including physiology and biochemistry. This is accompanied by growing demands for metabolic engineering of AAB to take advantage of their properties and to improve their biomanufacturing efficiencies. Controlled expression of target genes is key to fundamental and applied microbiological research. In order to get an overview of expression systems and their applications in AAB, we carried out a comprehensive literature search using the Web of Science Core Collection database. The Acetobacteraceae family currently comprises 49 genera. We found overall 6097 publications related to one or more AAB genera since 1973, when the first successful recombinant DNA experiments in Escherichia coli have been published. The use of plasmids in AAB began in 1985 and till today was reported for only nine out of the 49 AAB genera currently described. We found at least five major expression plasmid lineages and a multitude of further expression plasmids, almost all enabling only constitutive target gene expression. Only recently, two regulatable expression systems became available for AAB, an N-acyl homoserine lactone (AHL)-inducible system for Komagataeibacter rhaeticus and an L-arabinose-inducible system for Gluconobacter oxydans. Thus, after 35 years of constitutive target gene expression in AAB, we now have the first regulatable expression systems for AAB in hand and further regulatable expression systems for AAB can be expected. KEY POINTS: • Literature search revealed developments and usage of expression systems in AAB. • Only recently 2 regulatable plasmid systems became available for only 2 AAB genera. • Further regulatable expression systems for AAB are in sight.

摘要

醋酸菌(AAB)是有价值的生物催化剂,人们对了解其包括生理学和生物化学在内的基础知识的兴趣日益浓厚。与此同时,对醋酸菌进行代谢工程改造以利用其特性并提高其生物制造效率的需求也在不断增加。靶基因的可控表达是基础微生物学研究和应用微生物学研究的关键。为了全面了解醋酸菌中的表达系统及其应用,我们使用科学网核心合集数据库进行了全面的文献检索。醋酸杆菌科目前包括49个属。自1973年在大肠杆菌中首次成功进行重组DNA实验以来,我们共发现了6097篇与一个或多个醋酸菌属相关的出版物。醋酸菌中质粒的使用始于1985年,迄今为止,在目前描述的49个醋酸菌属中,只有9个属报道了质粒的使用情况。我们发现了至少五个主要的表达质粒谱系以及大量其他表达质粒,几乎所有这些质粒都只能实现靶基因的组成型表达。直到最近,醋酸菌才有了两种可调控的表达系统,一种是用于莱茵醋杆菌的N-酰基高丝氨酸内酯(AHL)诱导系统,另一种是用于氧化葡萄糖酸杆菌的L-阿拉伯糖诱导系统。因此,在醋酸菌中进行了35年的靶基因组成型表达之后,我们现在首次拥有了醋酸菌的可调控表达系统,并且有望开发出更多醋酸菌的可调控表达系统。要点:• 文献检索揭示了醋酸菌中表达系统的发展和使用情况。• 直到最近,只有两个醋酸菌属有两种可调控的质粒系统。• 更多醋酸菌的可调控表达系统指日可待。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/533f/8102297/bc26c117309c/253_2021_11269_Fig1_HTML.jpg

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