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温度适应酶的活性、稳定性和突变特征的荟萃分析。

A meta-analysis of the activity, stability, and mutational characteristics of temperature-adapted enzymes.

机构信息

UK Centre for Astrobiology, SUPA School of Physics and Astronomy, University of Edinburgh, James Clerk Maxwell Building, Peter Guthrie Tait Road, Edinburgh EH9 3FD, U.K.

Institute for Astronomy, University of Edinburgh, Royal Observatory, Blackford Hill, Edinburgh EH9 3HJ, U.K.

出版信息

Biosci Rep. 2021 Apr 30;41(4). doi: 10.1042/BSR20210336.

DOI:10.1042/BSR20210336
PMID:33871022
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8150157/
Abstract

Understanding the characteristics that define temperature-adapted enzymes has been a major goal of extremophile enzymology in recent decades. In the present study, we explore these characteristics by comparing psychrophilic, mesophilic, and thermophilic enzymes. Through a meta-analysis of existing data, we show that psychrophilic enzymes exhibit a significantly larger gap (Tg) between their optimum and melting temperatures compared with mesophilic and thermophilic enzymes. These results suggest that Tg may be a useful indicator as to whether an enzyme is psychrophilic or not and that models of psychrophilic enzyme catalysis need to account for this gap. Additionally, by using predictive protein stability software, HoTMuSiC and PoPMuSiC, we show that the deleterious nature of amino acid substitutions to protein stability increases from psychrophiles to thermophiles. How this ultimately affects the mutational tolerance and evolutionary rate of temperature adapted organisms is currently unknown.

摘要

了解定义适温酶特性的特点一直是近几十年来极端微生物酶学的主要目标。在本研究中,我们通过比较嗜冷酶、嗜温酶和嗜热酶来探究这些特性。通过对现有数据的元分析,我们表明与嗜温酶和嗜热酶相比,嗜冷酶的最适温度和熔点之间的差距(Tg)明显更大。这些结果表明,Tg 可能是一个有用的指标,可以判断一个酶是否为嗜冷酶,并且嗜冷酶催化的模型需要考虑到这种差距。此外,我们使用预测蛋白稳定性软件 HoTMuSiC 和 PoPMuSiC 表明,氨基酸取代对蛋白质稳定性的有害性质从嗜冷菌到嗜热菌逐渐增加。这最终如何影响适应温度的生物体的突变耐受性和进化速度目前尚不清楚。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f062/8150157/694ea4c5c83d/bsr-41-bsr20210336-g2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f062/8150157/16b28efa792d/bsr-41-bsr20210336-g1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f062/8150157/694ea4c5c83d/bsr-41-bsr20210336-g2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f062/8150157/16b28efa792d/bsr-41-bsr20210336-g1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f062/8150157/694ea4c5c83d/bsr-41-bsr20210336-g2.jpg

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本文引用的文献

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Nat Commun. 2020 May 26;11(1):2644. doi: 10.1038/s41467-020-16341-2.
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Protein stability governed by its structural plasticity is inferred by physicochemical factors and salt bridges.蛋白质的稳定性由其结构的可塑性决定,这可以通过物理化学因素和盐桥来推断。
Sci Rep. 2020 Feb 4;10(1):1822. doi: 10.1038/s41598-020-58825-7.
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Cloning and characterization of a thermostable glutathione reductase from a psychrophilic Arctic bacterium Sphingomonas sp.
从嗜冷北极菌 Sphingomonas sp. 中克隆和表征一种热稳定谷胱甘肽还原酶。
FEMS Microbiol Lett. 2019 Sep 1;366(18). doi: 10.1093/femsle/fnz218.
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Dynamic allostery can drive cold adaptation in enzymes.动态变构作用可以驱动酶的冷适应。
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Dynamical origins of heat capacity changes in enzyme-catalysed reactions.酶催化反应中热容变化的动力学起源。
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Physical and molecular bases of protein thermal stability and cold adaptation.蛋白质热稳定性和冷适应性的物理及分子基础。
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