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自适应结合激活的 G-四链体结合物的选择性和靶向性及其受化学动力学控制。

Selectivity and Targeting of G-Quadruplex Binders Activated by Adaptive Binding and Controlled by Chemical Kinetics.

机构信息

MOE Key Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry, State Key Laboratory of Oncology in South China, Sun Yat-Sen University, No. 135, Xingang Xi Road, 510275, Guangzhou, China.

School of Pharmaceutical and Chemical Engineering, Guangdong Pharmaceutical University, Changmingshui Avenue 9-13, 528458, Zhongshan, China.

出版信息

Angew Chem Int Ed Engl. 2021 Jul 5;60(28):15340-15343. doi: 10.1002/anie.202104624. Epub 2021 Jun 1.

Abstract

G-quadruplexes (G4s) are prevalent in oncogenes and are potential antitumor drug targets. However, binding selectivity of compounds to G4s still faces challenges. Herein, we report a platinum(II) complex (Pt1), whose affinity to G4-DNA is activated by adaptive binding and selectivity controlled by binding kinetics. The resolved structure of Pt1/VEGF-G4 (a promoter G4) shows that Pt1 matches 3'-G-tetrad of VEGF-G4 through Cl -dissociation and loop rearrangement of VEGF-G4. Binding rate constants are determined by coordination bond breakage/formation, correlating fully with affinities. The selective rate-determining binding step, Cl -dissociation upon G4-binding, is 2-3 orders of magnitude higher than dsDNA. Pt1 potently targets G4 in living cells, effectively represses VEGF expression, and inhibits vascular growth in zebrafish. We show adaptive G4-binding activation and controlled by kinetics, providing a complementary design principle for compounds targeting G4 or similar biomolecules.

摘要

四链体(G4s)广泛存在于致癌基因中,是潜在的抗肿瘤药物靶点。然而,化合物与 G4s 的结合选择性仍然面临挑战。在此,我们报告了一种铂(II)配合物(Pt1),其与 G4-DNA 的亲和力通过自适应结合得到激活,并通过结合动力学控制选择性。Pt1/VEGF-G4(启动子 G4)的解析结构表明,Pt1 通过 Cl-解离和 VEGF-G4 的环重排与 VEGF-G4 的 3'-G-四联体匹配。结合速率常数由配位键的断裂/形成决定,与亲和力完全相关。选择性的速率决定结合步骤,即 G4 结合时的 Cl-解离,比 dsDNA 高 2-3 个数量级。Pt1 能有效地靶向活细胞中的 G4,有效抑制 VEGF 的表达,并抑制斑马鱼的血管生长。我们展示了自适应的 G4 结合激活和动力学控制,为靶向 G4 或类似生物分子的化合物提供了一个补充的设计原则。

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