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定义鲍林-科里波纹片的景观:一个被遗弃的模体找到新家。

Defining the Landscape of the Pauling-Corey Rippled Sheet: An Orphaned Motif Finding New Homes.

机构信息

Department of Chemistry and Biochemistry, UCSC, 1156 High Street, Santa Cruz, California 95064, United States.

Chemical Biology Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick, Maryland 21702, United States.

出版信息

Acc Chem Res. 2021 May 18;54(10):2488-2501. doi: 10.1021/acs.accounts.1c00084. Epub 2021 Apr 26.

Abstract

When peptides are mixed with their mirror images in an equimolar ratio, two-dimensional periodic structural folds can form, in which extended peptide strands are arrayed with alternating chirality. The resultant topography class, termed the rippled β-sheet, was introduced as a theoretical concept by Pauling and Corey in 1953. Unlike other fundamental protein structural motifs identified around that time, including the α-helix and the pleated β-sheet, it took several decades before conclusive experimental data supporting the proposed rippled β-sheet motif were gained. Much of the key experimental evidence was provided over the course of the past decade through the concurrent efforts of our three laboratories. Studies that focused on developing new self-assembling hydrogel materials have shown that certain amphiphilic peptides form fibrils and hydrogel networks that are more rigid and have a higher thermodynamic stability when made from racemic peptide mixtures as opposed to pure enantiomers. Related interrogation of assemblies composed of mixtures of l- and d-amphiphilic peptides confirmed that the resulting fibrils were composed of alternating l/d peptides consistent with rippled β-sheets. It was also demonstrated that mirror-image amyloid beta (Aβ) could act as a molecular chaperone to promote oligomer-to-fibril conversion of the natural Aβ enantiomer, which was found to reduce Aβ neurotoxicity against different neuronal cell models. With a cross-disciplinary approach that combines experiment and theory, our three laboratories have demonstrated the unique biophysical, biochemical, and biological properties that arise upon mixing of peptide enantiomers, in consequence of rippled β-sheet formation. In this Account, we give an overview of the early history of the rippled β-sheet and provide a detailed structural description/definition of this motif relative to the pleated β-sheet. We then summarize the key findings, obtained on three unique sets of aggregating mirror-image peptide pairs through independent efforts of our three laboratories, and use these results to delineate the landscape of the rippled β-sheet structural motif to inspire future studies. Peptide sequence parameters that favor rippled β-sheet assembly are described, along with the accompanying kinetic and thermodynamic properties, as well as the resulting emergent physical properties of the assemblies. The Account then concludes with a brief overview of some key unresolved challenges in this nascent field. There is much potential for future applications of this unique supramolecular motif in the realm of materials design and biomedical research. We hope this Account will stimulate much-needed discussion of this fascinating structural class to eventually produce a fully quantitative, rational framework for the molecular engineering of rippled β-sheets in the future.

摘要

当肽与等量的镜像混合时,二维周期性结构折叠可以形成,其中伸展的肽链交替排列,具有交替的手性。这种拓扑结构类别,称为波纹β-折叠,是由鲍林和科里于 1953 年作为一个理论概念引入的。与当时同时确定的其他基本蛋白质结构基序不同,包括α-螺旋和折叠β-折叠,在获得支持所提出的波纹β-折叠基序的确凿实验数据之前,这需要几十年的时间。过去十年间,我们三个实验室的共同努力提供了大部分关键的实验证据。专注于开发新型自组装水凝胶材料的研究表明,某些两亲性肽形成的纤维和水凝胶网络在由外消旋肽混合物而不是纯对映体制成时更刚性且具有更高的热力学稳定性。对由 l-和 d-两亲性肽混合物组成的组装体的相关研究证实,所得纤维由交替的 l/d 肽组成,与波纹β-折叠一致。还证明,镜像淀粉样β(Aβ)可以作为分子伴侣促进天然 Aβ对映体的寡聚物到纤维的转化,发现这降低了 Aβ 对不同神经元细胞模型的神经毒性。通过结合实验和理论的跨学科方法,我们三个实验室已经证明了在肽对映体混合时出现的独特的生物物理、生化和生物学特性,这是由于波纹β-折叠的形成。在本报告中,我们概述了波纹β-折叠的早期历史,并提供了相对于折叠β-折叠的该基序的详细结构描述/定义。然后,我们总结了通过我们三个实验室的独立努力在三组独特的聚集镜像肽对上获得的关键发现,并利用这些结果描绘波纹β-折叠结构基序的景观,以激发未来的研究。描述了有利于波纹β-折叠组装的肽序列参数,以及伴随的动力学和热力学特性,以及组装体的相应涌现物理性质。该报告最后简要概述了该新兴领域的一些关键未解决的挑战。在材料设计和生物医学研究领域,这种独特的超分子基序具有很大的应用潜力。我们希望本报告将激发对这一迷人结构类别的急需讨论,最终为未来波纹β-折叠的分子工程提供一个完全定量的、合理的框架。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8415/8154201/cce02ea3a9ae/ar1c00084_0001.jpg

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