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三刺鱼:进化基因组学的模式系统。

Threespine Stickleback: A Model System For Evolutionary Genomics.

机构信息

Department of Ecology and Evolution, Stony Brook University, Stony Brook, New York 11794, USA; email:

University of California Museum of Paleontology, Berkeley, California 94720, USA.

出版信息

Annu Rev Genomics Hum Genet. 2021 Aug 31;22:357-383. doi: 10.1146/annurev-genom-111720-081402. Epub 2021 Apr 28.

Abstract

The repeated adaptation of oceanic threespine sticklebacks to fresh water has made it a premier organism to study parallel evolution. These small fish have multiple distinct ecotypes that display a wide range of diverse phenotypic traits. Ecotypes are easily crossed in the laboratory, and families are large and develop quickly enough for quantitative trait locus analyses, positioning the threespine stickleback as a versatile model organism to address a wide range of biological questions. Extensive genomic resources, including linkage maps, a high-quality reference genome, and developmental genetics tools have led to insights into the genomic basis of adaptation and the identification of genomic changes controlling traits in vertebrates. Recently, threespine sticklebacks have been used as a model system to identify the genomic basis of highly complex traits, such as behavior and host-microbiome and host-parasite interactions. We review the latest findings and new avenues of research that have led the threespine stickleback to be considered a supermodel of evolutionary genomics.

摘要

海洋三刺鱼对淡水的反复适应使其成为研究平行进化的主要生物。这些小鱼有多种不同的生态型,表现出广泛多样的表型特征。生态型在实验室中很容易杂交,而且家庭很大,发育速度足够快,可以进行数量性状位点分析,使三刺鱼成为一个多功能的模式生物,可以解决广泛的生物学问题。广泛的基因组资源,包括连锁图谱、高质量的参考基因组和发育遗传学工具,使人们深入了解适应的基因组基础,并确定控制脊椎动物特征的基因组变化。最近,三刺鱼被用作一个模型系统来识别高度复杂特征的基因组基础,如行为、宿主微生物组和宿主-寄生虫相互作用。我们回顾了最新的发现和新的研究途径,这些发现使三刺鱼被认为是进化基因组学的超级模型。

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