Sun Yulong, Zuo Zhuo, Kuang Yuanyuan
School of Life Sciences, Northwestern Polytechnical University, Xi'an 710072, China.
Key Laboratory for Space Biosciences & Biotechnology, Institute of Special Environmental Biophysics, School of Life Sciences, Northwestern Polytechnical University, Xi'an 710072, China.
Int J Mol Sci. 2021 Apr 24;22(9):4456. doi: 10.3390/ijms22094456.
Prolactin-releasing Peptide (PrRP) is a neuropeptide whose receptor is GPR10. Recently, the regulatory role of PrRP in the neuroendocrine field has attracted increasing attention. However, the influence of PrRP on macrophages, the critical housekeeper in the neuroendocrine field, has not yet been fully elucidated. Here, we investigated the effect of PrRP on the transcriptome of mouse bone marrow-derived macrophages (BMDMs) with RNA sequencing, bioinformatics, and molecular simulation. BMDMs were exposed to PrRP (18 h) and were subjected to RNA sequencing. Differentially expressed genes (DEGs) were acquired, followed by GO, KEGG, and PPI analysis. Eight qPCR-validated DEGs were chosen as hub genes. Next, the three-dimensional structures of the proteins encoded by these hub genes were modeled by Rosetta and Modeller, followed by molecular dynamics simulation by the Gromacs program. Finally, the binding modes between PrRP and hub proteins were investigated with the Rosetta program. PrRP showed no noticeable effect on the morphology of macrophages. A total of 410 DEGs were acquired, and PrRP regulated multiple BMDM-mediated functional pathways. Besides, the possible docking modes between PrRP and hub proteins were investigated. Moreover, GPR10 was expressed on the cell membrane of BMDMs, which increased after PrRP exposure. Collectively, PrRP significantly changed the transcriptome profile of BMDMs, implying that PrRP may be involved in various physiological activities mastered by macrophages.
催乳素释放肽(PrRP)是一种神经肽,其受体为GPR10。近年来,PrRP在神经内分泌领域的调节作用受到越来越多的关注。然而,PrRP对神经内分泌领域关键的“管家”巨噬细胞的影响尚未完全阐明。在此,我们运用RNA测序、生物信息学和分子模拟技术,研究了PrRP对小鼠骨髓来源巨噬细胞(BMDM)转录组的影响。将BMDM暴露于PrRP(18小时)后进行RNA测序。获取差异表达基因(DEG),随后进行基因本体(GO)、京都基因与基因组百科全书(KEGG)和蛋白质-蛋白质相互作用(PPI)分析。选择8个经qPCR验证的DEG作为枢纽基因。接下来,使用Rosetta和Modeller对这些枢纽基因编码的蛋白质的三维结构进行建模,然后通过Gromacs程序进行分子动力学模拟。最后,使用Rosetta程序研究PrRP与枢纽蛋白之间的结合模式。PrRP对巨噬细胞的形态没有明显影响。共获得410个DEG,PrRP调节多种BMDM介导的功能通路。此外,还研究了PrRP与枢纽蛋白之间可能的对接模式。而且,GPR10在BMDM的细胞膜上表达,在PrRP暴露后表达增加。总体而言,PrRP显著改变了BMDM的转录组谱,这意味着PrRP可能参与巨噬细胞掌握的各种生理活动。