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丹麦肺炎链球菌 8 型的分子特征与流行病学研究。

Molecular characterization and epidemiology of Streptococcus pneumoniae serotype 8 in Denmark.

机构信息

Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Artillerivej 5, DK-2300, Copenhagen S, Denmark.

Infectious Disease Epidemiology and Prevention, Statens Serum Institut, Copenhagen, Denmark.

出版信息

BMC Infect Dis. 2021 May 5;21(1):421. doi: 10.1186/s12879-021-06103-w.

Abstract

BACKGROUND

Streptococcus pneumoniae serotype 8 incidence has increased in Denmark after the introduction of pneumococcal conjugated vaccines (PCV). The mechanism behind the serotype 8 replacement is not well understood. In this study, we aimed to present epidemiological data on invasive pneumococcal disease (IPD) and molecular characterization of 96 serotype 8 clinical isolates.

METHODS

IPD data from 1999 to 2019 were used to calculate the incidence and age distribution. Whole-genome sequencing (WGS) analysis was performed on 96 isolates (6.8% of the total serotype 8 IPD isolates in the period) to characterize the isolates with respect to pneumococcal lineage traits, a range of genes with potential species discrimination, presence of colonization and virulence factors, and molecular resistance pattern.

RESULTS

The serotype 8 IPD incidence increased significantly (P < 0.05) for the age groups above 15 years after the introduction of PCV13, primarily affecting the elderly (65+). All isolates were phenotypically susceptible to penicillin, erythromycin and clindamycin. Molecular characterization revealed seven different MLST profiles with ST53 as the most prevalent lineage (87.5%) among the analyzed serotype 8 isolates. The genes covering the cell-surface proteins: lytA, rspB, pspA, psaA & Xisco and the pneumococcal toxin pneumolysin = ply were present in all isolates, while genes for the membrane transporter proteins: piaA/piaB/piaC; the capsular genes: cpsA (wzg) & psrP; the metallo-binding proteins zmpB & zmpC; and the neuroamidase proteins: nanA/nanB were variably present. Surprisingly, the putative transcriptional regulator gene SP2020 was not present in all isolates (98%). Susceptibility to penicillin, erythromycin and clindamycin was molecularly confirmed.

CONCLUSION

The observed serotype 8 replacement was not significantly reflected with a change in the MLST profile or changes in antibiotic resistance- or virulence determinants.

摘要

背景

在肺炎球菌结合疫苗(PCV)引入丹麦后,肺炎球菌 8 型血清型的发病率有所增加。8 型血清型替代的机制尚不清楚。本研究旨在介绍 1999 年至 2019 年侵袭性肺炎球菌病(IPD)的流行病学数据和 96 株 8 型临床分离株的分子特征。

方法

使用 IPD 数据计算发病率和年龄分布。对 96 株分离株(该期间总 8 型 IPD 分离株的 6.8%)进行全基因组测序(WGS)分析,以确定分离株的肺炎球菌谱系特征、具有潜在物种鉴别能力的一系列基因、定植和毒力因子的存在以及分子耐药模式。

结果

在 PCV13 引入后,15 岁以上年龄组的 8 型 IPD 发病率显著增加(P<0.05),主要影响老年人(65+)。所有分离株对青霉素、红霉素和克林霉素的表型均敏感。分子特征分析显示,7 种不同的 MLST 图谱,其中 ST53 是分析的 8 型分离株中最常见的谱系(87.5%)。所有分离株均存在覆盖细胞表面蛋白的基因:lytA、rspB、pspA、psaA 和 Xisco 以及肺炎球菌毒素肺炎球菌溶血素=ply,而膜转运蛋白基因:piaA/piaB/piaC;荚膜基因:cpsA(wzg)和 psrP;金属结合蛋白 zmpB 和 zmpC;和神经酰胺酶蛋白:nanA/nanB 则存在差异。令人惊讶的是,并非所有分离株都存在假定的转录调节基因 SP2020(98%)。青霉素、红霉素和克林霉素的敏感性在分子上得到了证实。

结论

观察到的 8 型血清型替代并没有明显反映在 MLST 图谱的变化、抗生素耐药性或毒力决定因素的变化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a97/8097992/3756d23aa474/12879_2021_6103_Fig1_HTML.jpg

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