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本文引用的文献

1
The 1B vaccine strain of Chlamydia abortus produces placental pathology indistinguishable from a wild type infection.
PLoS One. 2020 Nov 16;15(11):e0242526. doi: 10.1371/journal.pone.0242526. eCollection 2020.
2
Improved metagenomic analysis with Kraken 2.
Genome Biol. 2019 Nov 28;20(1):257. doi: 10.1186/s13059-019-1891-0.
5
NanoPack: visualizing and processing long-read sequencing data.
Bioinformatics. 2018 Aug 1;34(15):2666-2669. doi: 10.1093/bioinformatics/bty149.
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Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
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NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update.
Nucleic Acids Res. 2016 Jul 8;44(W1):W3-W10. doi: 10.1093/nar/gkw343. Epub 2016 May 2.
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Trimmomatic: a flexible trimmer for Illumina sequence data.
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.

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