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狭长三齿蛱蝶的完整线粒体基因组及其与 43 种叶蝉的比较分析。

The complete mitochondrial genome of Trifida elongate and comparative analysis of 43 leafhoppers.

机构信息

Institute of Entomology, Guizhou University, Guiyang 550025, China; Guizhou Key Laboratory for Plant Pest Management of Mountainous Region, Guizhou University, Guiyang 550025, China.

Institute of Entomology, Guizhou University, Guiyang 550025, China; Guizhou Key Laboratory for Plant Pest Management of Mountainous Region, Guizhou University, Guiyang 550025, China.

出版信息

Comp Biochem Physiol Part D Genomics Proteomics. 2021 Sep;39:100843. doi: 10.1016/j.cbd.2021.100843. Epub 2021 Apr 28.

Abstract

In this study, the mitochondrial genome of Trifida elongate was sequenced, and comparative analysis of T. elongate and other 43 leafhoppers was performed based on the mitochondrial genome. The mitochondrial genome sequence length of T. elongate was 14,924 bp. It comprised 13 protein-coding genes, 2 ribosomal RNA (rRNA) genes, 22 transport RNA (tRNA) genes, and 1 non-coding control region. The control region is located between the rrnS and trnI genes, is characterized by two tandem repeats and three simple sequence repeats. Phylogenetic analysis showed that T. elongate is closely related with Bolanusoides shaanxiensis and Limassolla lingchuanensis (bootstrap value = 92% and posterior probabilities = 1). Analysis of synonymous and non-synonymous nucleotide substitutions showed that Ka/Ks value of the 13 protein-coding genes of 8 subfamily leafhoppers were less than 1 ranging from 0.0315 to 0.9928. atp8 had the highest Ka/Ks value whereas cox1 had the lowest Ka/Ks value. This study provides information on the structure and sequence characteristics of the mitochondrial genome of T. elongata. Typhlocybinae is clustered with (Cicadellinae+(Idiocerinae+(Mileewinae+(Nirvaninae+(Evacanthinae+Ledrinae))))).

摘要

在这项研究中,测序了 Trifida elongate 的线粒体基因组,并基于线粒体基因组对 T. elongate 与其他 43 种叶蝉进行了比较分析。T. elongate 的线粒体基因组序列长度为 14924bp,包含 13 个蛋白质编码基因、2 个核糖体 RNA(rRNA)基因、22 个转运 RNA(tRNA)基因和 1 个非编码控制区。该控制区位于 rrnS 和 trnI 基因之间,具有两个串联重复序列和三个简单序列重复序列。系统发育分析表明,T. elongate 与 Bolanusoides shaanxiensis 和 Limassolla lingchuanensis 关系密切(bootstrap 值为 92%,后验概率为 1)。同义与非同义核苷酸替换分析表明,8 个亚科叶蝉的 13 个蛋白质编码基因的 Ka/Ks 值均小于 1,范围为 0.0315 至 0.9928。atp8 的 Ka/Ks 值最高,cox1 的 Ka/Ks 值最低。本研究为 T. elongata 线粒体基因组的结构和序列特征提供了信息。Typhlocybinae 与(Cicadellinae+(Idiocerinae+(Mileewinae+(Nirvaninae+(Evacanthinae+Ledrinae))))聚类。

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