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鸡C/EBPζ基因:腹脂的表达谱、关联分析及功能变异鉴定

Chicken C/EBPζ gene: Expression profiles, association analysis, and identification of functional variants for abdominal fat.

作者信息

Li Z, Liu X, Li Y, Wang W, Wang N, Xiao F, Gao H, Guo H, Li H, Wang S

机构信息

Key Laboratory of Chicken Genetics and Breeding, Ministry of Agriculture and Rural Affairs, Harbin 150030, China; Key Laboratory of Animal Genetics, Breeding and Reproduction, Education Department of Heilongjiang Province, Harbin 150030, China; College of Animal Science and Technology, Northeast Agricultural University, Harbin 150030, China.

Fujian Sunnzer Biotechnology Development Co., Ltd, 354100, Guangze, Fujian Province, China.

出版信息

Domest Anim Endocrinol. 2021 Jul;76:106631. doi: 10.1016/j.domaniend.2021.106631. Epub 2021 Apr 15.

DOI:10.1016/j.domaniend.2021.106631
PMID:33979717
Abstract

CCAAT enhancer binding protein ζ (C/EBPζ) plays an important role in adipose proliferation and differentiation in humans. However, very little is known about the effect of C/EBPζ on the growth and development of adipose tissues in domesticated animals. The present study attempted to investigate the mRNA expression profiles of chicken C/EBPζ in a variety of tissues; analyze the association of its variants with abdominal fat; and identify the functional variants for abdominal fat. The tissue expression profiles revealed that C/EBPζ was highly expressed in 19 tissues obtained from broilers. The expression level of C/EBPζ in fat broilers was significantly lower than that in lean broilers in the duodenum, ileum, cecum, kidney, pectoral muscle, and liver (P < 0.05). Among 170 polymorphic loci of C/EBPζ, 9 single nucleotide polymorphisms (SNPs) demonstrated a significant association with chicken abdominal fat traits (P < 0.05) as well as significant discrepancies in their allelic frequencies between fat and lean birds. Particularly, only C/EBPζ g.7085A>C exhibited significant correlation with abdominal fat traits (P < 0.00015) using the Bonferroni method. The results revealed that, in preadipocyte immortalized cells (ICPI), the luciferase activity of the A allele of g.7085A>C locus was remarkably stronger than that of the C allele (P < 0.05). In silico analysis showed that g.7085A>C locus was located in the binding region of the transcription factor SOX5, which possesses the ability to transform C/EBPζ transcription efficiency through binding with SOX5. In summary, the data obtained from this study suggested that C/EBPζ is a potential candidate gene responsible for abdominal fat deposition in chicken and that g.7085A>C is a functional SNP that can be promisingly leveraged for marker assisted selection (MAS) in future chicken breeding programs.

摘要

CCAAT增强子结合蛋白ζ(C/EBPζ)在人类脂肪组织的增殖和分化中发挥着重要作用。然而,关于C/EBPζ对家畜脂肪组织生长发育的影响,人们了解甚少。本研究旨在探究鸡C/EBPζ在多种组织中的mRNA表达谱;分析其变异与腹部脂肪的关联;并鉴定影响腹部脂肪的功能性变异。组织表达谱显示,C/EBPζ在肉鸡的19种组织中高表达。在十二指肠、回肠、盲肠、肾脏、胸肌和肝脏中,脂肪型肉鸡的C/EBPζ表达水平显著低于瘦型肉鸡(P < 0.05)。在C/EBPζ的170个多态位点中,9个单核苷酸多态性(SNP)与鸡腹部脂肪性状显著相关(P < 0.05),且脂肪型和瘦型鸡之间的等位基因频率存在显著差异。特别是,使用Bonferroni方法分析发现,只有C/EBPζ g.7085A>C与腹部脂肪性状显著相关(P < 0.00015)。结果表明,在前体脂肪细胞永生化细胞(ICPI)中,g.7085A>C位点A等位基因的荧光素酶活性明显强于C等位基因(P < 0.05)。生物信息学分析表明,g.7085A>C位点位于转录因子SOX5的结合区域,SOX5能够通过与C/EBPζ结合来改变其转录效率。总之,本研究获得的数据表明,C/EBPζ是鸡腹部脂肪沉积的潜在候选基因,g.7085A>C是一个功能性SNP,有望在未来的鸡育种计划中用于标记辅助选择(MAS)。

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