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关节菌属 SW1 抗糖尿病潜力的综合基因组学和功能特征分析。

Integrated Genomic and Functional Characterization of the Anti-diabetic Potential of Arthrobacter sp. SW1.

机构信息

National Centre for Microbial Resource (NCMR), National Centre for Cell Science (NCCS), Central Tower, Sai Trinity Complex, Pashan, Pune, 411021, India.

Chemical Sciences and Technology Division, CSIR North East Institute of Science & Technology, Jorhat, Assam, 785006, India.

出版信息

Curr Microbiol. 2021 Jul;78(7):2577-2588. doi: 10.1007/s00284-021-02523-8. Epub 2021 May 13.

Abstract

For decades, bacterial natural products have served as valuable resources for developing novel drugs to treat several human diseases. Recent advancements in the integrative approach of using genomic and functional tools have proved beneficial in obtaining a comprehensive understanding of these biomolecules. This study presents an in-depth characterization of the anti-diabetic activity exhibited by a bacterial isolate SW1, isolated from an effluent treatment plant. As a primary screening, we assessed the isolate for its potential to inhibit alpha-amylase and alpha-glucosidase enzymes. Upon confirmation, we further utilized LC-MS, ESI-MS/MS, and NMR spectroscopy to identify and characterize the biomolecule. These efforts were coupled with the genomic assessment of the biosynthetic gene cluster involved in the anti-diabetic compound production. Our investigation discovered that the isolate SW1 inhibited both α-amylase and α-glucosidase activity. The chemical analysis suggested the production of acarbose, an anti-diabetic biomolecule, which was further confirmed by the presence of biosynthetic gene cluster "acb" in the genome. Our in-depth chemical characterization and genome mining approach revealed the potential of bacteria from an unconventional niche, an effluent treatment plant. To the best of our knowledge, it is one of the first few reports of acarbose production from the genus Arthrobacter.

摘要

几十年来,细菌天然产物一直是开发治疗多种人类疾病的新型药物的宝贵资源。最近,利用基因组和功能工具的综合方法的进步,证明了在全面了解这些生物分子方面是有益的。本研究深入表征了从废水处理厂分离出的细菌分离物 SW1 所表现出的抗糖尿病活性。作为初步筛选,我们评估了该分离物抑制α-淀粉酶和α-葡萄糖苷酶的潜力。在确认后,我们进一步利用 LC-MS、ESI-MS/MS 和 NMR 光谱来鉴定和表征生物分子。这些努力与参与抗糖尿病化合物生产的生物合成基因簇的基因组评估相结合。我们的研究发现,分离物 SW1 抑制了α-淀粉酶和α-葡萄糖苷酶的活性。化学分析表明产生了阿卡波糖,这是一种抗糖尿病生物分子,这进一步通过基因组中存在生物合成基因簇“acb”得到证实。我们深入的化学表征和基因组挖掘方法揭示了来自非常规生境(废水处理厂)的细菌的潜力。据我们所知,这是首次从节杆菌属中生产阿卡波糖的报道之一。

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