从猪粪便中分离出的产志贺样毒素细菌K_EC180的全基因组序列
Complete genome sequence of K_EC180, a bacterium producing shiga-like toxin isolated from swine feces.
作者信息
Kim Hyeri, Cho Jae Hyoung, Cho Jin Ho, Song Minho, Shin Hakdong, Kim Sheena, Kim Eun Sol, Kim Hyeun Bum, Lee Ju-Hoon
机构信息
Department of Animal Resources Science, Dankook University, Cheonan 31116, Korea.
Division of Food and Animal Science, Chungbuk National University, Cheongju 28644, Korea.
出版信息
J Anim Sci Technol. 2021 Mar;63(2):461-464. doi: 10.5187/jast.2021.e38. Epub 2021 Mar 31.
normally colonizes the lower intestine of animals and humans, but some serotypes are foodborne pathogens. The K_EC180 was isolated from swine feces that were collected from a weaner pig. In this genome announcement, K_EC180 was sequenced using PacBio RS II and Illumina NextSeq 500 platforms. The complete chromosome of K_EC180 is composed of one circular chromosome (5,017,281 bp) with 50.4% of guanine + cytosine (G + C) content, 4,935 of coding sequence (CDS), 88 of tRNA, and 22 of rRNA genes. The complete genome of K_EC180 contains the toxin genes such as shiga-like toxins (stxA and stxB).
通常定殖于动物和人类的下肠道，但某些血清型是食源性病原体。K_EC180是从一头断奶仔猪收集的猪粪便中分离出来的。在本基因组公布中，使用PacBio RS II和Illumina NextSeq 500平台对K_EC180进行了测序。K_EC180的完整染色体由一条环状染色体（5,017,281 bp）组成，鸟嘌呤 + 胞嘧啶（G + C）含量为50.4%，有4,935个编码序列（CDS）、88个tRNA和22个rRNA基因。K_EC180的完整基因组包含志贺样毒素（stxA和stxB）等毒素基因。
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