Department of Neurology, Peking University Shenzhen Hospital, Shenzhen, 518036, PR China.
The Clinical College of Peking University, Shenzhen Hospital of Anhui Medical University, Shenzhen, 518036, PR China.
Biomark Med. 2021 Jun;15(8):585-595. doi: 10.2217/bmm-2020-0325. Epub 2021 May 14.
In this study, we aimed to identify potential diagnostic biomarkers Parkinson's disease (PD) by exploring microarray gene expression data of PD patients. Differentially expressed genes associated with PD were screened from the GSE99039 dataset using weighted gene co-expression network analysis, followed by gene ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses, gene-gene interaction network analysis and receiver operator characteristics analysis. We identified two PD-associated modules, in which genes from the chemokine signaling pathway were primarily enriched. In particular, , , and directly interacted with known PD-associated genes and showed higher expression in the PD samples, and may thus be potential biomarkers in PD diagnosis. A DFG-analysis identified a four-gene panel (, , , ) as a potential diagnostic predictor to diagnose PD.
在这项研究中,我们旨在通过探索帕金森病 (PD) 患者的微阵列基因表达数据来鉴定潜在的诊断生物标志物。使用加权基因共表达网络分析从 GSE99039 数据集筛选与 PD 相关的差异表达基因,然后进行基因本体和京都基因与基因组百科全书通路富集分析、基因-基因相互作用网络分析和接收者操作特征分析。我们鉴定出两个与 PD 相关的模块,其中趋化因子信号通路的基因主要富集。特别是 、 、 和 与已知的 PD 相关基因直接相互作用,在 PD 样本中表达更高,因此可能是 PD 诊断的潜在生物标志物。DFG 分析确定了一个由四个基因组成的面板( 、 、 、 )作为潜在的诊断预测因子来诊断 PD。