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基于生物信息学方法分析帕金森病与糖尿病视网膜病变的关系。

Analysis of the Relationship Between Parkinson's Disease and Diabetic Retinopathy Based on Bioinformatics Methods.

机构信息

Department of Hygienic Toxicology, School of Public Health, Harbin Medical University, 157 Baojian Road, NanGang District, Harbin, Heilongjiang Province, People's Republic of China, 150081.

Department of Anesthesiology, The 962nd Hospital of The PLA Joint Logistic Support Force, 45 Xuefu Road, NanGang District, Harbin, Heilongjiang Province, People's Republic of China, 150006.

出版信息

Mol Neurobiol. 2024 Sep;61(9):6395-6406. doi: 10.1007/s12035-024-03982-3. Epub 2024 Feb 3.

Abstract

The objective of the study was to explore the relationship and potential mechanism between Parkinson's disease (PD) and diabetic retinopathy (DR) using bioinformatics methods. We first examined the causal relationship between PD and DR by Mendelian randomization (MR) analysis. The datasets of PD and DR patients from the Gene Expression Omnibus database were used to identify differentially expressed genes (DEGs). Then, we performed the Gene Ontology, Kyoto Encyclopedia of Genes and Genomes, and immune infiltration analysis. We also constructed a protein-protein interaction network and receiver operating characteristic (ROC) curve. Finally, an online website was used for drug prediction. The MR analysis demonstrated a causal relationship between DR and PD (odds ratio [OR] = 0.86; 95% confidence interval [CI] 0.79-0.93; p = 3.24E - 04), in which DR acted as a protective factor against PD. There were 81 DEGs identified from the PD and DR datasets, of which 29 genes had protein interaction relationships, and enrichment analysis showed that these genes were mainly related to immune pathways. As indicated by immune cell infiltration analysis, the expression of immune cells between PD and the control group was significantly different. ROC curve results showed five genes had diagnostic value, and several potential chemical compounds were predicted to target the genes. Our findings demonstrate a reduced risk of PD in patients with DR. We also found that PD and DR are closely related in terms of inflammation, which provides clues for further exploring the common mechanisms and interaction of these two diseases.

摘要

本研究旨在利用生物信息学方法探讨帕金森病 (PD) 和糖尿病视网膜病变 (DR) 之间的关系和潜在机制。我们首先通过 Mendelian 随机分析 (MR) 检验 PD 和 DR 之间的因果关系。我们使用来自基因表达综合数据库的 PD 和 DR 患者数据集来鉴定差异表达基因 (DEGs)。然后,我们进行了基因本体论、京都基因与基因组百科全书和免疫浸润分析。我们还构建了蛋白质-蛋白质相互作用网络和接收者操作特征 (ROC) 曲线。最后,我们使用在线网站进行药物预测。MR 分析表明 DR 和 PD 之间存在因果关系 (比值比 [OR] = 0.86;95%置信区间 [CI] 0.79-0.93;p = 3.24E - 04),其中 DR 是 PD 的保护因素。从 PD 和 DR 数据集鉴定出 81 个 DEGs,其中 29 个基因具有蛋白质相互作用关系,富集分析表明这些基因主要与免疫途径有关。免疫细胞浸润分析表明,PD 和对照组之间的免疫细胞表达存在显著差异。ROC 曲线结果显示,有 5 个基因具有诊断价值,预测了几种潜在的化学化合物可作为这些基因的靶向药物。我们的研究结果表明,DR 患者患 PD 的风险降低。我们还发现 PD 和 DR 在炎症方面密切相关,这为进一步探索这两种疾病的共同机制和相互作用提供了线索。

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