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中国肺腺癌患者循环肿瘤DNA(ctDNA)的下一代测序(NGS)评估的突变谱:真实世界数据分析

Mutation Profile Assessed by Next-Generation Sequencing (NGS) of Circulating Tumor DNA (ctDNA) in Chinese Lung Adenocarcinoma Patients: Analysis of Real-World Data.

作者信息

Zhao Songchen, Cong Xiaofeng, Liu Ziling

机构信息

The First Hospital of Jilin University, China.

出版信息

Biomed Res Int. 2021 May 4;2021:8817898. doi: 10.1155/2021/8817898. eCollection 2021.

Abstract

BACKGROUND

Genomic testing gives guidance to the treatment options in lung adenocarcinoma patients, but some patients are unable to obtain tissue samples due to lesion location or intolerance. Cell-free circulating tumor DNA (ctDNA) tested in plasma or pleural effusion is an advanced access to solve the problem. Our study descriptively identified the genetic variations of advanced Chinese lung adenocarcinoma patients and analyzed the overall survival of patients with EGFR mutations.

METHODS

A total of 152 patients' plasma samples were included, and gene mutations were detected by NGS using an Illumina Miseq tabletop sequencer.

RESULTS

Frequencies of altered were EGFR 46.05%, ALK 7.24%, KRAS 6.58%, PIK3CA 6.58%, PTEN 2.63%, HER2 1.97%, MET 1.97%, BRAF 1.32%, NF1 1.32%, and ROS1 0.66%. We identified 48 cases with double or triple driver gene mutations. Multiple mutations were more frequently observed in EGFR and PIK3CA genes. Patients harboring coexistent mutations with an EGFR mutation tended to have a shorter overall survival than those with exclusively EGFR mutations.

CONCLUSION

EGFR, ALK, and KRAS were common driver gene in Chinese patients with stage IV lung adenocarcinoma. Multiple mutations were detected in the ctDNA samples and involve more EGFR and PIK3CA mutations. The existence of coexisting gene mutations may have adverse effects on the prognosis of patients with EGFR mutation. The unknown mutations discovered by NGS may provide new targets for gene targeting therapy, and ctDNA test by NGS is an effective method for making appropriate treatment choices.

摘要

背景

基因组检测可为肺腺癌患者的治疗选择提供指导,但部分患者因病变位置或耐受性问题无法获取组织样本。血浆或胸腔积液中检测的游离循环肿瘤DNA(ctDNA)是解决该问题的一种先进方法。我们的研究描述性地确定了晚期中国肺腺癌患者的基因变异,并分析了EGFR突变患者的总生存期。

方法

共纳入152例患者的血浆样本,使用Illumina Miseq台式测序仪通过NGS检测基因突变。

结果

变异频率分别为:EGFR 46.05%、ALK 7.24%、KRAS 6.58%、PIK3CA 6.58%、PTEN 2.63%、HER2 1.97%、MET 1.97%、BRAF 1.32%、NF1 1.32%和ROS1 0.66%。我们鉴定出48例具有双重或三重驱动基因突变的病例。EGFR和PIK3CA基因中更常观察到多个突变。携带与EGFR突变共存突变的患者总生存期往往比仅具有EGFR突变的患者短。

结论

EGFR、ALK和KRAS是中国IV期肺腺癌患者常见的驱动基因。在ctDNA样本中检测到多个突变,且更多涉及EGFR和PIK3CA突变。共存基因突变的存在可能对EGFR突变患者的预后产生不利影响。NGS发现的未知突变可能为基因靶向治疗提供新靶点,通过NGS进行ctDNA检测是做出合适治疗选择的有效方法。

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