Ashworth Laboratories, Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, United Kingdom.
British Antarctic Survey, Natural Environment Research Council, Cambridge, United Kingdom.
Mol Biol Evol. 2021 Aug 23;38(9):4043-4055. doi: 10.1093/molbev/msab153.
Mollusc shells are a result of the deposition of crystalline and amorphous calcite catalyzed by enzymes and shell matrix proteins (SMP). Developing a detailed understanding of bivalve mollusc biomineralization pathways is complicated not only by the multiplicity of shell forms and microstructures in this class, but also by the evolution of associated proteins by domain co-option and domain shuffling. In spite of this, a minimal biomineralization toolbox comprising proteins and protein domains critical for shell production across species has been identified. Using a matched pair design to reduce experimental noise from inter-individual variation, combined with damage-repair experiments and a database of biomineralization SMPs derived from published works, proteins were identified that are likely to be involved in shell calcification. Eighteen new, shared proteins likely to be involved in the processes related to the calcification of shells were identified by the analysis of genes expressed during repair in Crassostrea gigas, Mytilus edulis, and Pecten maximus. Genes involved in ion transport were also identified as potentially involved in calcification either via the maintenance of cell acid-base balance or transport of critical ions to the extrapallial space, the site of shell assembly. These data expand the number of candidate biomineralization proteins in bivalve molluscs for future functional studies and define a minimal functional protein domain set required to produce solid microstructures from soluble calcium carbonate. This is important for understanding molluscan shell evolution, the likely impacts of environmental change on biomineralization processes, materials science, and biomimicry research.
软体动物壳是由酶和壳基质蛋白(SMP)催化的结晶和无定形碳酸钙沉积的结果。深入了解双壳类软体动物生物矿化途径不仅受到此类贝壳形式和微观结构多样性的影响,还受到相关蛋白通过结构域共选择和结构域改组进化的影响。尽管如此,还是确定了一个最小的生物矿化工具箱,其中包括对物种间贝壳产生至关重要的蛋白质和蛋白质结构域。使用配对设计来减少个体间变异引起的实验噪声,结合损伤修复实验和从已发表的研究中获得的生物矿化 SMP 数据库,鉴定出可能参与贝壳矿化的蛋白质。通过分析在 Crassostrea gigas、Mytilus edulis 和 Pecten maximus 的修复过程中表达的基因,鉴定出 18 种新的、共同的可能与贝壳钙化过程相关的蛋白质。参与离子转运的基因也被认为可能通过维持细胞酸碱平衡或向壳外腔(贝壳组装的部位)转运关键离子而参与钙化。这些数据扩展了双壳类软体动物中候选生物矿化蛋白的数量,以供未来的功能研究,并定义了产生从可溶性碳酸钙到固体微观结构所需的最小功能蛋白结构域集。这对于理解软体动物壳的进化、环境变化对生物矿化过程的可能影响、材料科学和仿生学研究都很重要。