Department of Biomedical Engineering, Yale University, New Haven, CT 06520, USA.
Yale Stem Cell Center and Yale Cancer Center, Yale School of Medicine, New Haven, CT 06520, USA.
STAR Protoc. 2021 May 11;2(2):100532. doi: 10.1016/j.xpro.2021.100532. eCollection 2021 Jun 18.
This protocol describes the use of the deterministic barcoding in tissue for spatial omics sequencing platform to construct a multi-omics atlas on fixed frozen tissue samples. This approach uses a microfluidic-based method to introduce combinatorial DNA oligo barcodes directly to the cells in a tissue section fixed on a glass slide. This technique does not directly resolve single cells but can achieve a near-single-cell resolution for spatial transcriptomics and spatial analysis of a targeted panel of proteins. For complete details on the use and execution of this protocol, please refer to Liu et al. (2020).
本方案描述了在组织中使用确定性条形码进行空间组学测序平台,以构建固定冷冻组织样本的多组学图谱。此方法使用基于微流控的方法将组合 DNA 寡核苷酸条形码直接引入到固定在载玻片上的组织切片中的细胞中。该技术不能直接解析单细胞,但可以实现空间转录组学和靶向蛋白的空间分析的近单细胞分辨率。有关此方案的使用和执行的完整详细信息,请参考 Liu 等人(2020 年)。