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原发性干燥综合征中 B 细胞相关的关键基因和通路的鉴定。

Identification of the key genes and pathways involved in B cells in primary Sjögren' s syndrome.

机构信息

Department of Ophthalmology, The Fourth Affiliated Hospital of China Medical University, Shenyang, China.

Department of Gerontology and Geriatrics, Shengjing Hospital of China Medical University, Shenyang, China.

出版信息

Bioengineered. 2021 Dec;12(1):2055-2073. doi: 10.1080/21655979.2021.1930753.

DOI:10.1080/21655979.2021.1930753
PMID:34034637
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8806908/
Abstract

Primary Sjögren' s syndrome (pSS) is a relatively common autoimmune disease, which mainly involves the exocrine glands, causing dry eye, dryness of mouth, fatigue and pain in the joints, thus severely affecting the normal lives of patients. B cell populations are considered to play an important role in their pathogenesis and pSS patients are generally characterized by exhibiting biological signs of B cell activation. Moreover, another important characterized change in the peripheral blood of pSS patients is found to be the decreased number of circulating memory B cells. However, the mechanisms underlying the B cell activation and the decreased level of circulating memory B cells in pSS patients are still unclear. Therefore, we identified key genes and pathways involved in B cells in pSS through a combination of several bioinformatic approaches including Cell-type Identification By Estimating Relative Subsets Of RNA Transcripts (CIBERSORT) and weighted gene co-expression network analysis (WGCNA) using gene expression data of pSS patients and controls from an open database Gene Expression Omnibus (GEO). The results may provide some novel insights into the pathogenesis of pSS. Moreover, we constructed and validated a diagnostic model for pSS by using the expression patterns of these key genes, which may assist clinicians in diagnosing pSS.

摘要

原发性干燥综合征(pSS)是一种较为常见的自身免疫性疾病,主要累及外分泌腺体,导致眼睛干涩、口干、关节疲劳和疼痛,从而严重影响患者的正常生活。B 细胞群体被认为在其发病机制中起重要作用,pSS 患者通常表现出 B 细胞活化的生物学标志。此外,还发现 pSS 患者外周血的另一个重要特征性变化是循环记忆 B 细胞数量减少。然而,pSS 患者 B 细胞活化和循环记忆 B 细胞水平降低的机制仍不清楚。因此,我们通过结合几种生物信息学方法,包括使用来自开放数据库基因表达综合数据库(GEO)的 pSS 患者和对照的基因表达数据进行细胞类型鉴定的相对转录本估计(CIBERSORT)和加权基因共表达网络分析(WGCNA),确定了 pSS 中涉及 B 细胞的关键基因和途径。这些结果可能为 pSS 的发病机制提供一些新的见解。此外,我们使用这些关键基因的表达模式构建和验证了 pSS 的诊断模型,这可能有助于临床医生诊断 pSS。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/68829c2557a9/KBIE_A_1930753_F0012_OC.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/68e475e428e3/KBIE_A_1930753_F0007_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/7b41e388a9d3/KBIE_A_1930753_F0008_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/6b64a4218c2d/KBIE_A_1930753_F0009_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/b80aec7650e7/KBIE_A_1930753_F0010_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/41d8ac83c42b/KBIE_A_1930753_F0011_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/68829c2557a9/KBIE_A_1930753_F0012_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/8b5ad3d8d1e5/KBIE_A_1930753_UF0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/18c5e983eed7/KBIE_A_1930753_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/b7076f59c95f/KBIE_A_1930753_F0002_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/915c649d226a/KBIE_A_1930753_F0003_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/b650251ae091/KBIE_A_1930753_F0004_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/cf2925ffce52/KBIE_A_1930753_F0005_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/8e7442f30084/KBIE_A_1930753_F0006_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/68e475e428e3/KBIE_A_1930753_F0007_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/7b41e388a9d3/KBIE_A_1930753_F0008_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/6b64a4218c2d/KBIE_A_1930753_F0009_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/b80aec7650e7/KBIE_A_1930753_F0010_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/41d8ac83c42b/KBIE_A_1930753_F0011_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2364/8806908/68829c2557a9/KBIE_A_1930753_F0012_OC.jpg

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