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宽带介电谱揭示的序列变异动态扰动的实验诊断

Experimental diagnostic of sequence-variant dynamic perturbations revealed by broadband dielectric spectroscopy.

作者信息

Bourgeat Laëtitia, Pacini Lorenza, Serghei Anatoli, Lesieur Claire

机构信息

Univ Lyon, CNRS, INSA Lyon, Université Claude Bernard Lyon 1, Ecole Centrale de Lyon, Ampère, UMR5005, 69622 Villeurbanne, France; Univ Lyon, CNRS, IMP, 69622, Villeurbanne, France.

Univ Lyon, CNRS, INSA Lyon, Université Claude Bernard Lyon 1, Ecole Centrale de Lyon, Ampère, UMR5005, 69622 Villeurbanne, France; Institut Rhônalpin des systèmes complexes, IXXI-ENS-Lyon, 69007, Lyon, France.

出版信息

Structure. 2021 Dec 2;29(12):1419-1429.e3. doi: 10.1016/j.str.2021.05.005. Epub 2021 May 28.

DOI:10.1016/j.str.2021.05.005
PMID:34051139
Abstract

Genetic diversity leads to protein robustness, adaptability, and failure. Some sequence variants are structurally robust but functionally disturbed because mutations bring the protein onto unfolding/refolding routes resulting in misfolding diseases (e.g., Parkinson). We assume dynamic perturbations introduced by mutations foster the alternative unfolding routes and test this possibility by comparing the unfolding dynamics of the heat-labile enterotoxin B pentamers and the cholera toxin B pentamers, two pentamers structurally and functionally related and robust to 17 sequence variations. The B-subunit thermal unfolding dynamics are monitored by broadband dielectric spectroscopy in nanoconfined and weakly hydrated conditions. Distinct dielectric signals reveal the different B-subunits unfolding dynamics. Combined with network analyses, the experiments pinpoint the role of three mutations A1T, E7D, and E102A, in diverting LTB to alternative unfolding routes that protect LTB from dissociation. Altogether, the methodology diagnoses dynamics faults that may underlie functional disorder, drug resistance, or higher virulence of sequence variants.

摘要

基因多样性导致蛋白质的稳健性、适应性和功能失效。一些序列变异在结构上是稳健的,但功能受到干扰,因为突变使蛋白质走上了去折叠/重新折叠的路径,从而导致错误折叠疾病(如帕金森病)。我们假设突变引入的动态扰动促进了替代性去折叠路径,并通过比较热不稳定肠毒素B五聚体和霍乱毒素B五聚体的去折叠动力学来检验这种可能性,这两种五聚体在结构和功能上相关,并且对17种序列变异具有抗性。通过宽带介电谱在纳米受限和弱水合条件下监测B亚基的热去折叠动力学。不同的介电信号揭示了不同B亚基的去折叠动力学。结合网络分析,实验确定了三个突变A1T、E7D和E102A在将LTB转移到替代性去折叠路径中的作用,这些路径可保护LTB不发生解离。总之,该方法可诊断出可能是序列变异的功能障碍、耐药性或更高毒力基础的动力学故障。

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A protocol to measure slow protein dynamics of the cholera toxin B pentamers using broadband dielectric spectroscopy.
一种使用宽带介电谱测量霍乱毒素 B 五聚体慢蛋白动力学的方案。
STAR Protoc. 2022 Jul 18;3(3):101561. doi: 10.1016/j.xpro.2022.101561. eCollection 2022 Sep 16.
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Mapping Function from Dynamics: Future Challenges for Network-Based Models of Protein Structures.来自动力学的映射函数:基于网络的蛋白质结构模型面临的未来挑战。
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