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侵染苹果和梨的苹果茎沟病毒的适应性与密码子使用偏好性

Adaptation and Codon-Usage Preference of Apple and Pear-Infecting Apple Stem Grooving Viruses.

作者信息

Kim Jaedeok, Lal Aamir, Kil Eui-Joon, Kwak Hae-Ryun, Yoon Hwan-Su, Choi Hong-Soo, Kim Mikyeong, Ali Muhammad, Lee Sukchan

机构信息

Department of Integrative Biotechnology, Sungkyunkwan University, Suwon 16419, Korea.

Incheon International Airport Regional Office, Animal and Plant Quarantine Agency, Seoul 22382, Korea.

出版信息

Microorganisms. 2021 May 21;9(6):1111. doi: 10.3390/microorganisms9061111.

DOI:10.3390/microorganisms9061111
PMID:34063757
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8223792/
Abstract

Apple stem grooving virus (ASGV; genus ) is an economically important virus. It has an approx. 6.5 kb, monopartite, linear, positive-sense, single-stranded RNA genome. The present study includes identification of 24 isolates-13 isolates from apple ( L.) and 11 isolates from pear ( L.)-from different agricultural fields in South Korea. The coat protein (CP) gene of the corresponding 23 isolates were amplified, sequenced, and analyzed. The CP sequences showed phylogenetic separation based on their host species, and not on the geography, indicating host adaptation. Further analysis showed that the ASGV isolated in this study followed host adaptation influenced and preferred by the host codon-usage.

摘要

苹果茎沟病毒（ASGV；属 ）是一种具有经济重要性的病毒。它有一个约6.5 kb的单分体线性正义单链RNA基因组。本研究包括从韩国不同农业领域鉴定出24个分离株——13个来自苹果（ 种），11个来自梨（ 种）。对相应的23个分离株的外壳蛋白（CP）基因进行了扩增、测序和分析。CP序列根据宿主物种而非地理位置显示出系统发育分离，表明存在宿主适应性。进一步分析表明，本研究中分离出的ASGV遵循宿主适应性，受宿主密码子使用情况的影响且表现出偏好。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/9e58d1292fc2/microorganisms-09-01111-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/502a0c7d34a2/microorganisms-09-01111-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/924a25eeed10/microorganisms-09-01111-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/d3ae297af4fa/microorganisms-09-01111-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/408277972406/microorganisms-09-01111-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/63481c92d447/microorganisms-09-01111-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/2491244338c5/microorganisms-09-01111-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/ba682ac094c5/microorganisms-09-01111-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/a0426cc9f0ff/microorganisms-09-01111-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/9e58d1292fc2/microorganisms-09-01111-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/502a0c7d34a2/microorganisms-09-01111-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/924a25eeed10/microorganisms-09-01111-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/d3ae297af4fa/microorganisms-09-01111-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/408277972406/microorganisms-09-01111-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/63481c92d447/microorganisms-09-01111-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/2491244338c5/microorganisms-09-01111-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/ba682ac094c5/microorganisms-09-01111-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/a0426cc9f0ff/microorganisms-09-01111-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab7/8223792/9e58d1292fc2/microorganisms-09-01111-g009.jpg

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