Institut de Ciència Molecular, Universitat de València, 46071 València, Spain.
Departament de Química Física, Universitat de València, 46100 Burjassot, Spain.
Molecules. 2021 May 14;26(10):2911. doi: 10.3390/molecules26102911.
Photocycloreversion plays a central role in the study of the repair of DNA lesions, reverting them into the original pyrimidine nucleobases. Particularly, among the proposed mechanisms for the repair of DNA (6-4) photoproducts by photolyases, it has been suggested that it takes place through an intermediate characterized by a four-membered heterocyclic oxetane or azetidine ring, whose opening requires the reduction of the fused nucleobases. The specific role of this electron transfer step and its impact on the ring opening energetics remain to be understood. These processes are studied herein by means of quantum-chemical calculations on the two azetidine stereoisomers obtained from photocycloaddition between 6-azauracil and cyclohexene. First, we analyze the efficiency of the electron-transfer processes by computing the redox properties of the azetidine isomers as well as those of a series of aromatic photosensitizers acting as photoreductants and photo-oxidants. We find certain stereodifferentiation favoring oxidation of the -isomer, in agreement with previous experimental data. Second, we determine the reaction profiles of the ring-opening mechanism of the cationic, neutral, and anionic systems and assess their feasibility based on their energy barrier heights and the stability of the reactants and products. Results show that oxidation largely decreases the ring-opening energy barrier for both stereoisomers, even though the process is forecast as too slow to be competitive. Conversely, one-electron reduction dramatically facilitates the ring opening of the azetidine heterocycle. Considering the overall quantum-chemistry findings, ,-dimethylaniline is proposed as an efficient photosensitizer to trigger the photoinduced cycloreversion of the DNA lesion model.
光环重排在 DNA 损伤修复研究中起着核心作用,可将其逆转回原始嘧啶核苷碱基。特别是,在光解酶修复 DNA(6-4)光产物的提出机制中,有人提出它是通过一个中间态发生的,该中间态的特征是具有一个四元杂环噁唑烷或氮杂环丁烷环,其打开需要融合核苷碱基的还原。该电子转移步骤的特定作用及其对环打开能学的影响仍有待理解。本文通过对 6-氮杂尿嘧啶与环己烯之间光环加成得到的两种氮杂环丁烷立体异构体进行量子化学计算,研究了这些过程。首先,我们通过计算氮杂环丁烷异构体以及一系列作为光还原剂和光氧化剂的芳香族光敏剂的氧化还原性质来分析电子转移过程的效率。我们发现某些立体选择性有利于 -异构体的氧化,这与先前的实验数据一致。其次,我们确定了阳离子、中性和阴离子体系的开环反应途径的反应轮廓,并根据其能垒高度以及反应物和产物的稳定性来评估其可行性。结果表明,氧化过程大大降低了两种立体异构体的开环能垒,尽管该过程预计太慢而无法竞争。相反,单电子还原极大地促进了氮杂环丁烷杂环的开环。综合考虑整体量子化学结果,我们提出 -二甲基苯胺作为一种有效的光敏剂,以引发 DNA 损伤模型的光诱导环重排。